Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 419 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 390 / 1e-132 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G47620 354 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 249 / 7e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 237 / 3e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 191 / 4e-56 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 179 / 7e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 166 / 9e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 160 / 5e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G088100 [exp] 729 / 0 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 553 / 0 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 550 / 0 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 546 / 0 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 539 / 0 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G170400 [exp] 271 / 8e-86 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 266 / 7e-84 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 260 / 3e-82 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 252 / 4e-79 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043168 [exp] 605 / 0 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 594 / 0 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 455 / 1e-157 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 457 / 2e-157 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 455 / 8e-157 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 447 / 1e-154 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 439 / 2e-150 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 391 / 1e-131 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 339 / 8e-114 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 250 / 9e-79 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G361300.3 pacid=42788308 polypeptide=Potri.001G361300.3.p locus=Potri.001G361300 ID=Potri.001G361300.3.v4.1 annot-version=v4.1 ATGGAATCAGATCTTGGTAAGCTCTTCATTGGTGGGATTTCATGGGACACTGATGAGGAACGTCTTAAGGAATATTTTAGCAAGTATGGGGAAGTGGTTG AGGCTGTGATCATGAGAGATCGTGTTACAGGCCGTGCCCGTGGCTTTGGTTTTGTTGTCTTTGCAGATCCTATTGTTGCCGAGAGGGTCATCATGGAGAA GCACGTGGTTGATGGCCGCACAGTTGAAGCAAAGAAGGCTGTTCCTAGGGATGACCAGCACATTTTAAGTAGAAACACTAGTAGTATTCATGGTTCTCCA GGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGCCTTGCGTCTACGGTTACAGAGAATGACTTCAAGAAGTACTTTGAGCAGTTTGGTATTATTACTG ATGTTGTAGTGATGTACGATCACAACACTCTGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCTGAGGAAGCAGTGGACAGAGTTCTGCATAAAAC ATTTCATGAACTCAATGGTAAAATGGTTGAGGTCAAGAGGGCAGTCCCAAAGGAGCTATCACCAGGTCCTAGTCGGAGCCCTCTGATGGGGTATAACTAT GGTTTGACTAGGGCCAACAACTTCCTTAATGCATATGCTCAGGGATATAATATGAACTCTATTGGAGGTTTTGGAATGAGGATGGATAGTAGGTTTAATC CACTCGCCACTGGTCGAAGTGGATTTGCTCCCTTTAGCACCGCTGGTTATGGGATGAGTATGAATTTAGAGCCAGCCTTGAGTCCAAGCTACGGTGGAGG TTCCAACTTTAGTAACACTCCTGCATATGGGCGGATCTCAAGTCCTTATTATAGTGGGAATCCAAGCAGGTACAGCACACCAGTAGGTTATGGTGAGGGG AATGCAAGAAATGATTCTCTCTTAAGCCCTACTACTTGGAATGTCTGGGGCAATGGCAGCCACAATACTGCCACAAATCCTGCCAGCCCTGGTCCTTTAT TGGGCTCCAGAACTGGAAATTTTGGAGTTTCATTTGGGAATAGTGGATCGAATTGGGGCACTTCTCCTGTATCAGCTCAAGGCAGAGGAAGTGCTTCTGG CTATACTACTGGCAGCATGGGTTATGGGAGTGGTGACAACAATTATGGTTTGAGTGGGGCAGGATATGTAAGAAACAGTGGCACTGGTGCACCACCAACA TCATCATTCTCTGGGTCAGCTGGTGGTTATGAGGGGTCCTATGGGGACCTTTATCGCAGTGGTTCTGTTTATGGTGATTCAACTTGGCAATCTGCTACTC CTGAGCTTGATGGTTGTGGTTCATTTGGTTATGGGCTCGGTGATGTAGCTTCAGATGTTACAACTAAGAGTTCCGAGGGTTATATTGGAAGTTATGGTGT TACAAGTAGACAATCAAATAGAGGAATTGCTACCTAG
AA sequence Show only first row Show all	>Potri.001G361300.3 pacid=42788308 polypeptide=Potri.001G361300.3.p locus=Potri.001G361300 ID=Potri.001G361300.3.v4.1 annot-version=v4.1 MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRVTGRARGFGFVVFADPIVAERVIMEKHVVDGRTVEAKKAVPRDDQHILSRNTSSIHGSP GPGRTKKIFVGGLASTVTENDFKKYFEQFGIITDVVVMYDHNTLRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKELSPGPSRSPLMGYNY GLTRANNFLNAYAQGYNMNSIGGFGMRMDSRFNPLATGRSGFAPFSTAGYGMSMNLEPALSPSYGGGSNFSNTPAYGRISSPYYSGNPSRYSTPVGYGEG NARNDSLLSPTTWNVWGNGSHNTATNPASPGPLLGSRTGNFGVSFGNSGSNWGTSPVSAQGRGSASGYTTGSMGYGSGDNNYGLSGAGYVRNSGTGAPPT SSFSGSAGGYEGSYGDLYRSGSVYGDSTWQSATPELDGCGSFGYGLGDVASDVTTKSSEGYIGSYGVTSRQSNRGIAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.001G361300 [exp]	0	1
AT5G22780			Adaptor protein complex AP-2, ...		Potri.009G150300 [exp]	4.89	0.8902
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.015G055200 [exp]	5.19	0.8913
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.011G154000 [exp]	11.09	0.8468
AT5G51150			Mitochondrial import inner mem...		Potri.015G111200 [exp]	11.22	0.8615
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.013G004400 [exp]	11.74	0.9001	ACLA.3
AT5G49540			Rab5-interacting family protei...		Potri.010G148600 [exp]	12.00	0.8850
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	13.74	0.8824
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G156900 [exp]	15.16	0.8755
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.016G088200 [exp]	15.16	0.8914	SYP71.2
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.005G199100 [exp]	17.32	0.8876	Pt-KDSA.2

Compare expression of checked genes

Potri.001G361300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.