Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02650 533 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 140 / 2e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G61400 136 / 8e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 134 / 8e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 131 / 3e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 130 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 130 / 1e-31 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 129 / 3e-31 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G39710 129 / 3e-31 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 128 / 5e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045000 [exp] 146 / 4e-37 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 139 / 1e-34 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 139 / 1e-34 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 137 / 4e-34 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 136 / 7e-34 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 136 / 1e-33 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 135 / 1e-33 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 135 / 1e-33 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 135 / 2e-33 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013236 [exp] 540 / 0 AT3G02650 489 / 7e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030756 [exp] 528 / 0 AT3G02650 484 / 3e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 137 / 1e-33 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 135 / 3e-33 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 134 / 1e-32 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 133 / 2e-32 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 132 / 3e-32 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 128 / 6e-31 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 128 / 8e-31 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 126 / 2e-30 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G361500.1 pacid=42788261 polypeptide=Potri.001G361500.1.p locus=Potri.001G361500 ID=Potri.001G361500.1.v4.1 annot-version=v4.1 ATGTGGAGATCAATAGCAGCAAAATCCAGAGTGGCAGCACGGAACTTTGGTGCAACCAAAAACCCCAACAACAGCAACAAGGTATATCCTTCTCAATCTC ATATCTCCGTATGGGTTTCCTCTCAATCTAGTGAAAACCTTAGATTCCTCTCATATTTCTCTTCAAACCCAAATGAAAACGATCATTCCCCCCCTACCAA TGATGATTCTTCAATTATTTCTGGGGAACATAATGATACCCAGTTTGAGGGTTTATCAGATCAAATTCCACTGCCTTTTAGTGAAAATGGTGATGCCCGG ATGGATACTTGTGCTTCGGGGGATGTGAGTGTTGTCAGTCTTGCTGGAGAAGAGAATGTGGAGAGCGAGACTTATGAGATAGATGTTGAGAAGTTAGAGA ATGTGTTGCATCTGTTGCAAAGTAGTGATGATGGGTCTTTAGAGTCAACTCTTGATACTTTTAGCTTGGATTTACATGAGGAGTTTGTGGTGAAAGTGCT CGAGACCCCGCATGTTTTGGGAGAGAATTTGATTAGGTTTTTTAAATGGGCGATGAAGAAACAGGATCTTAGCGTTACTACTCGTGCAATTGATGTGCTT GTTTCCTCTATATGTAGTAGTGAGCTTAGAAGAAAAAATGCTTATGCTTTGTGGGATTTGGTTAGGGAAATTGGCGAAAAGAATGAGGGTTTGGTGAGTG TAGGGAGTCTTAATCAGTTGATAGCTTTGTTGTCTAAGTTAGGTAAAGGGAAGGCAGCTTTAGAGGTTTTTGACAAATCAAAGGATTTTGGTTGTGTCCC GGATTCCGAGACATATTATTATACAATTGAAGCCCTTTGTAGGCGCTCCTTTTATGATTGGGCTTGGATAGTTTGTGAGAAAATGCTGGATCAAGGACCA TTACCTGATAGTGAGAAAATCGGTAAGATTATTTGTTGGTTTTGTAAAGGGAGTAAGGCAAAAGATGCCCACAAAGTTTATTTATTGGCAAAGGAGAAGA GCAAGTGCCCACCTAAGCCTGCTCTCTATTTTTTGATTGGATCACTATGCCGGGATGACGGAACTGTCAATTTAGCTTTGGAGATGTTGAATGATTTTGA AGGAGAAGCAAAAAAGTATGCGATTAAGCCTTTTTCATCTGTTATTCGTGGTTTGTGTAGGATCAAAGATCTTGATGGTGCTAAACAGTTACTTTCAAAG ATGATTGTTGAGGGCCCGCCTCCCGGCAATGCTGTTTTTAATACAGTTATCAGTGGCTATTGTAAGGGTGGAGATATGAAGGAGGCAATAGAGATTATGA AACTTATGGAAAGTAGGGGTCTGAAACCAGATGTGTACACGTATACTGTTATTATTAGTGGTTATTCAAATGGTGGTCAGATGGAGGAGGCATGCTACAT ACTATCAGAAGCAAAAAAGAAGCACTCTAAACTGAGTCCTGTAACTTACCATGCACTTATTCGAGGGTATTGCAAACTAGACCAGTTTGACAAAGCTTTG GAGTTGTTGGCAGAGATGGAGAAGTTTGGGGTTCAACCTAATGCAGATGAGTACAATAAGCTGATTCAATCTCTTTGCTTAAAGTCCTTAGATTGGGGAA CAGCAGAGAAGCTGTTTGCAGAAATGAAGGAGAAAGGCTTGTATCTAAATTCAATCACCCGGAGCCTTATAACCGCAGTCAAGGAGCTGGAGCAGGAGGG GTTAGCAAAAGAAGTAAGCATTGAAGTCTGA
AA sequence Show only first row Show all	>Potri.001G361500.1 pacid=42788261 polypeptide=Potri.001G361500.1.p locus=Potri.001G361500 ID=Potri.001G361500.1.v4.1 annot-version=v4.1 MWRSIAAKSRVAARNFGATKNPNNSNKVYPSQSHISVWVSSQSSENLRFLSYFSSNPNENDHSPPTNDDSSIISGEHNDTQFEGLSDQIPLPFSENGDAR MDTCASGDVSVVSLAGEENVESETYEIDVEKLENVLHLLQSSDDGSLESTLDTFSLDLHEEFVVKVLETPHVLGENLIRFFKWAMKKQDLSVTTRAIDVL VSSICSSELRRKNAYALWDLVREIGEKNEGLVSVGSLNQLIALLSKLGKGKAALEVFDKSKDFGCVPDSETYYYTIEALCRRSFYDWAWIVCEKMLDQGP LPDSEKIGKIICWFCKGSKAKDAHKVYLLAKEKSKCPPKPALYFLIGSLCRDDGTVNLALEMLNDFEGEAKKYAIKPFSSVIRGLCRIKDLDGAKQLLSK MIVEGPPPGNAVFNTVISGYCKGGDMKEAIEIMKLMESRGLKPDVYTYTVIISGYSNGGQMEEACYILSEAKKKHSKLSPVTYHALIRGYCKLDQFDKAL ELLAEMEKFGVQPNADEYNKLIQSLCLKSLDWGTAEKLFAEMKEKGLYLNSITRSLITAVKELEQEGLAKEVSIEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	0	1
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	2.82	0.8595
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	3.87	0.8506
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.001G024500 [exp]	4.24	0.8176	Pt-IMP4.1
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	4.47	0.8564
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	5.65	0.8458
AT5G48240			unknown protein		Potri.014G170500 [exp]	6.48	0.8115
AT5G15550			Transducin/WD40 repeat-like su...		Potri.017G093300 [exp]	7.07	0.8318
AT3G13230			RNA-binding KH domain-containi...		Potri.001G469200 [exp]	8.94	0.7984
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	11.00	0.7895
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.015G001900 [exp]	11.53	0.7635

Compare expression of checked genes

Potri.001G361500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.