Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-WRK.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26640 540 / 0 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G03340 249 / 9e-76 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT2G38470 248 / 1e-75 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT4G26440 246 / 3e-74 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT1G13960 243 / 2e-73 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 233 / 9e-71 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G04880 223 / 2e-66 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT2G30250 221 / 2e-66 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G37260 187 / 3e-54 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT4G30935 171 / 3e-47 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G087900 [exp] 885 / 0 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.013G153400 [exp] 284 / 3e-88 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 275 / 6e-85 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.004G120800 [exp] 269 / 5e-83 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.016G128300 [exp] 261 / 8e-80 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 255 / 8e-78 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 252 / 3e-77 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.014G164300 [exp] 250 / 2e-76 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2) Potri.008G091900 [exp] 246 / 9e-75 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016595 [exp] 659 / 0 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 637 / 0 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10043167 [exp] 518 / 6e-180 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 400 / 7e-136 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10012215 [exp] 270 / 1e-83 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10001265 [exp] 259 / 2e-79 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10006368 [exp] 258 / 5e-79 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10015377 [exp] 257 / 2e-78 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10030424 [exp] 250 / 9e-77 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10012322 [exp] 248 / 2e-76 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G361600.2 pacid=42790841 polypeptide=Potri.001G361600.2.p locus=Potri.001G361600 ID=Potri.001G361600.2.v4.1 annot-version=v4.1 ATGGACAACAATACCTCTCGCTCTGAGGTTTCCGACTGCGGCGATCCAACGAGGCCGGAGTCCGGCGGCGGCGGTGCTAGGTACAAGCTGATGTCGCCGG CCAAGCTTCCGATCTCGAGGTCGGCTTGCATCACGATCCCTCCTGGACTCAGTCCGACCTCGTTTCTTGAGTCTCCAGTTCTTCTCTCTAATGTTAAGGC AGAGCCTTCCCCCACTACTGGTACGTTTACTAAGCCTCGAACAGCTCTTGGCTCTCTTAGCTCCACTCCATATTCTGCTACAACTGTTTCATCCACAGCG TGCGGAGAAAGAAAATCCGACTACTTTGAGTTTAGACCATATGCTAGGTCAAACATGGTTTCTGCAGATATAAACCATCAGAGGAGCACACAATGTGCTC AAGTCCAAAGCCAGTGCCATTCACAATCATTTGCCTCACCACCTTTGGTAAAAGGTGAGATGGAAGTATCCACAAATGAGTTGAGTCTGTCAGCATCCCT TCACATGGTTACTTCAGTTGCTAGTGCACCTGCTGAAGTTGATTCAGATGAACTAAACCAAACGGGGCTCTCTAGCAGTGGGCTTCAGGCATCACAGTCT GATCATAGAGCAGGAACTGCGCCTTCAATGTCATCTGATGATGGATATAACTGGAGAAAATATGGACAGAAACATGTTAAGGGAAGTGAGTTCCCTCGAA GCTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAGTTATTTGAGCGCTCCCATGATGGACAAATAACAGAGATTATCTACAAGGGTACACATGA TCATCCTAAACCACAACCCAGCCGCCGATATGCCTCTGGTTCTGTTTTGTCCATGCAGGAAGATAGATTTGACAAGTCTTCATCTCTGCCTAACCAAGGT GACAAGTCACCTGGTGCTTATGGACAGGTGCCTCATGCTATCGAGCCAAATGGTGCCCTTGAACTGTCTACTGGAGCAAATGATGATACTGGAGAAGGTG CCGAAGACGATGATGATCCCTTCTCAAAAAGAAGGAGGTTGGATGCTGGAGGTTTTGATGTTACTCCAGTGGTCAAACCTATCCGGGAACCACGTGTTGT CGTGCAAACTCTGAGTGAGGTTGATATACTGGATGATGGGTACAGGTGGCGCAAATATGGCCAGAAAGTGGTGAGAGGAAATCCTAATCCAAGGAGTTAC TACAAATGCACAAATGCTGGATGCCCAGTTAGAAAGCACGTTGAGAGGGCATCGCATGATCCAAAAGCAGTTATAACCACATATGAGGGGAAACACAATC ATGATGTACCTACAGCTAGGACAAACAGTCATGACATGGCGGGACCATCAGCTGTGAATGGACCCTCAAGGATTAGACCAGATGAAAACGAGACAATTAG CCTTGATCTTGGGGTCGGGATCAGTTCTACAACTGAAAACCAGTCCAGCGATCAGCAACAAGCTTTGCATGCTGAACTTATCAAACACGAGAACCAAGCA AGTGGTTCTAGTTTCAGAGTAGTTCATGCAACCCCAATTACGGCTTACTATGGTGTTTTAAATGGTGGCATGAATCAGTATGGATCTAGGCAAATTCCAG GTGAAAGCCGTAGCATTGAAATTCCACCTTATCCATATCCGCAGAACATGGGAAGATTATTAACGGGTCCATAA
AA sequence Show only first row Show all	>Potri.001G361600.2 pacid=42790841 polypeptide=Potri.001G361600.2.p locus=Potri.001G361600 ID=Potri.001G361600.2.v4.1 annot-version=v4.1 MDNNTSRSEVSDCGDPTRPESGGGGARYKLMSPAKLPISRSACITIPPGLSPTSFLESPVLLSNVKAEPSPTTGTFTKPRTALGSLSSTPYSATTVSSTA CGERKSDYFEFRPYARSNMVSADINHQRSTQCAQVQSQCHSQSFASPPLVKGEMEVSTNELSLSASLHMVTSVASAPAEVDSDELNQTGLSSSGLQASQS DHRAGTAPSMSSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRYASGSVLSMQEDRFDKSSSLPNQG DKSPGAYGQVPHAIEPNGALELSTGANDDTGEGAEDDDDPFSKRRRLDAGGFDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSY YKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTNSHDMAGPSAVNGPSRIRPDENETISLDLGVGISSTTENQSSDQQQALHAELIKHENQA SGSSFRVVHATPITAYYGVLNGGMNQYGSRQIPGESRSIEIPPYPYPQNMGRLLTGP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Potri.001G361600 [exp]	0	1	Pt-WRK.2
AT1G17200			Uncharacterised protein family...		Potri.011G140200 [exp]	5.74	0.9129
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019500 [exp]	7.74	0.9103
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.006G066900 [exp]	10.95	0.8965
					Potri.007G088800 [exp]	11.48	0.8983
					Potri.010G070301 [exp]	11.48	0.8691
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.006G094700 [exp]	11.66	0.8347
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.014G142400 [exp]	11.83	0.8789
AT5G14230			unknown protein		Potri.011G151300 [exp]	12.00	0.8843
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	18.33	0.8809
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Potri.002G143400 [exp]	19.74	0.8305

Compare expression of checked genes

Potri.001G361600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.