Plant FIBer expression Database

Potri.001G361900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37190 682 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011023
[exp]
661 / 0 AT4G37190 646 / 0.0 unknown protein
Lus10001001
[exp]
650 / 0 AT4G37190 605 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0566 Tubulin PF10644 Misat_Tub_SegII Misato Segment II tubulin-like domain
CL0566 Tubulin PF14881 Tubulin_3 Tubulin domain
Representative CDS sequence
>Potri.001G361900.1 pacid=42788907 polypeptide=Potri.001G361900.1.p locus=Potri.001G361900 ID=Potri.001G361900.1.v4.1 annot-version=v4.1
ATGAGGGAATTAGTGACGGTTCAAGTTGGAGGTTTTGCAAATTTTGTAGGCTCTCATTTCTGGAACTTCCAGGATGAGTTGCTTGGATTAGCTGGGGATC
CTGACAGTGATCCAGTTTTCAAAAACCAAAGTCAGTACCTCAATATGGACACTCTCTACCGCACTGGCGAAACAAACCAAGGTGTTCAGACTTATACTCC
TCGCTTACTTTCAATAGACTACCAAGGGTCTCTTGGATCTATGAGTTCACGTGGTACGTTGTATAACGAGAGCTCATCAGCACCTTCAAATGTCTGCACA
TGGACTAGTAATGTTTCAACTCATGCATCTGAGCCTTTAAAGAAGAATTTGTTCTTGCAAAGTTTGTACGAGGAAGAGCTGGAGAACTTGAGGCTCTCAA
AAGGTATAAGCAATGGGAAGAATGATAATCCAAGAGAAATACAAAATCAGGACATAGTTGATTGTTTAGAAAGTGATGTCCAGTATTGGACAGATTTCTC
AAAAGTACACTACCATCCCCAAAGTTTATACGAGTTAAATGGATTATGGATGAATAATGTGGAATTTGACAATTATGGAATTGGAAGGGATATTTTTTCT
GGGGGTCTACGAGGAGAAGAAATAAGTGAGAGGCTTCGGTTTTTCATAGAAGAGTGCGACCACATTCAGGGATTTCAATTCATTGTTGATGACTCAGGAG
GTTTCTCTGCTATAGCTGCAGACTTTTTGGAGAGTATTGCAGATGAATATACAAATACACCAGTTTTACTTTATACTGTGAGGGGTCCTGGTTCTCACAT
GAACCTGACTAGCCAAAAACAAAGACTTTCCAGGAGCATTCACGATGCACTTTCTTTTTCAAGACTGTCATCCTTCTGTAAATTGATTGTGCCAGTTGGT
TTACCCTTGCTAAGTACAAGTAAAGCTTCCATGCACCTTTGCATTAAAGATGAGATGCCTTACCACAGCAGTGCAGTGTATGCCACTGCTCTCCACTCTA
TTAGTGTCCCTTTCCGAATTGAGCCACTTGGACCTGCAAATTCGCATAATTTTTCTGGCGCTGTGGATGTTAATGGAGTTATACAAATGTTAGCAGGGCA
AGCTAGGCAAAATATGGTGACTATTCTCGATGTTGCAATGCCAGCACCTCCTATTTCTGGGAAACATGTTGAGCACTCTTTACTGAGGAATTTGCAGCCA
TTAACACCAGAGATTGCAGAAGACGTGGAGGATATGCAAGCAGTGGAGTTTATGACTGTGCATGGAGCTCTTCGATCCGGAGGTCACCATGCTTTCATTT
CTGAAGTAACGGATTCAGTTAATGCTGCTTATGAAAATTCCTCATCAAGACCAAAATTCTGTCATTTATCAGTCTCCAGTTGCCCACTTCCAATACCATT
GCCATTTCCTAAAATCTTTTGTAACCTTGTTGGCCAACACGGTGAGCTCTTGAGCAGCCCGGTTCCAGGTTGTTCATCAAGGGGATCACTTGATGTCCAC
TCCATCCCCATGGCAGCTAGACTGCGCTCAAGCACAGCTGTCTTGCCATTTTTGGAGAGTAGGTTGGCAAATCTCCGCAGACTTGGAATTCAGCAAGGAG
CCCCTGGGACCGAGTTAGTTAGAAGCTGGGGGTTTGGGAAGGATGAATTAGAAGACATGGAAGAGACCCTATCTAAAATGGTCACAACACTCGATGACCG
TGCTCAATTATCTGACTCGGATTAG
AA sequence
>Potri.001G361900.1 pacid=42788907 polypeptide=Potri.001G361900.1.p locus=Potri.001G361900 ID=Potri.001G361900.1.v4.1 annot-version=v4.1
MRELVTVQVGGFANFVGSHFWNFQDELLGLAGDPDSDPVFKNQSQYLNMDTLYRTGETNQGVQTYTPRLLSIDYQGSLGSMSSRGTLYNESSSAPSNVCT
WTSNVSTHASEPLKKNLFLQSLYEEELENLRLSKGISNGKNDNPREIQNQDIVDCLESDVQYWTDFSKVHYHPQSLYELNGLWMNNVEFDNYGIGRDIFS
GGLRGEEISERLRFFIEECDHIQGFQFIVDDSGGFSAIAADFLESIADEYTNTPVLLYTVRGPGSHMNLTSQKQRLSRSIHDALSFSRLSSFCKLIVPVG
LPLLSTSKASMHLCIKDEMPYHSSAVYATALHSISVPFRIEPLGPANSHNFSGAVDVNGVIQMLAGQARQNMVTILDVAMPAPPISGKHVEHSLLRNLQP
LTPEIAEDVEDMQAVEFMTVHGALRSGGHHAFISEVTDSVNAAYENSSSRPKFCHLSVSSCPLPIPLPFPKIFCNLVGQHGELLSSPVPGCSSRGSLDVH
SIPMAARLRSSTAVLPFLESRLANLRRLGIQQGAPGTELVRSWGFGKDELEDMEETLSKMVTTLDDRAQLSDSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37190 unknown protein Potri.001G361900
[exp]
0 1
AT5G37930 Protein with RING/U-box and TR... Potri.004G091800
[exp]
5.47 0.7847
AT5G42320 Zn-dependent exopeptidases sup... Potri.005G250300
[exp]
8.12 0.7189
AT1G25540 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME... Potri.010G128600
[exp]
8.48 0.7490 PFT1.1
AT3G12940 2-oxoglutarate (2OG) and Fe(II... Potri.011G143000
[exp]
9.38 0.7701
AT5G17510 unknown protein Potri.019G042800
[exp]
12.48 0.7398
AT5G53060 RNA-binding KH domain-containi... Potri.015G011100
[exp]
14.89 0.7626
AT4G32360 Pyridine nucleotide-disulphide... Potri.017G118801
[exp]
20.97 0.7489
AT5G60410 ATSIZ1, SIZ1 DNA-binding protein with MIZ/S... Potri.010G219600
[exp]
21.95 0.7736
AT1G64050 unknown protein Potri.001G098500
[exp]
21.97 0.7595
AT2G11000 ATMAK10 MAK10 homologue (.1.2) Potri.006G065000
[exp]
22.44 0.7415 Pt-ATMAK10.3

Potri.001G361900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.