Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55930 858 / 0 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT3G13070 852 / 0 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT2G14520 69 / 4e-12 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 67 / 1e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14230 53 / 6e-07 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 49 / 9e-06 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 47 / 3e-05 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT1G03270 45 / 0.0001 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082300 [exp] 66 / 4e-11 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 62 / 8e-10 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 58 / 1e-08 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 57 / 3e-08 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.010G030200 [exp] 55 / 1e-07 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.008G202100 [exp] 54 / 2e-07 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.014G196900 [exp] 48 / 2e-05 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004777 [exp] 962 / 0 AT1G55930 884 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Lus10003111 [exp] 955 / 0 AT1G55930 866 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Lus10005259 [exp] 66 / 5e-11 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 57 / 4e-08 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 55 / 6e-08 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 55 / 1e-07 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 53 / 7e-07 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 52 / 2e-06 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 51 / 2e-06 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 51 / 3e-06 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF01595 [poplar] [flax] DUF21 Cyclin M transmembrane N-terminal domain PF03471 [poplar] [flax] CorC_HlyC Transporter associated domain
Representative CDS sequence Show only first row Show all	>Potri.001G362100.1 pacid=42789167 polypeptide=Potri.001G362100.1.p locus=Potri.001G362100 ID=Potri.001G362100.1.v4.1 annot-version=v4.1 ATGGTAATGGAGATTGCATTTGAGTCATCAATTCTGGGTCGACCCATATTCATTTCTGGCACCAAAACCTCTTCTTTCTTGCATTACAATCGGGTTTCGA AGATACCCTTTAAGGTTTCCCAAAAGAGTTATCAATACCCACCTCGTATTTCATCAAAACTTACCGATTTTAGACCTTACTGTAGTTCAATTTTGCCAAG AAATCGTTCAAAATCATCTCGCAATGTTAGCACTGATCTGGGTACTGATCAAAATGTGAACTTGGAGTTAATAAAAGTGTTGTTGAAAAGGGGTGTTGTT TTTGGTGCAATGGTTTGTGGGGTTTTGGTTTTTGGGTGCAGGAGGGTGCTTGCATCTGAGGGTGTGGTTAATGCGGGGTACGGAGTTATTGGGCAGAGTA TATTGTTGTTGAGGAATGCTTGGCCTAAAATCTCGCAGCTCCTTAGAGTTTTTAAAGAGCAAGGTTTGATATTGGCTGCGCTTTTGGGACTGTCTGCATT TTTTTCCATGGCTGAGACTTCCATAACCACGTTATGGCCATGGAAGGTGCGTGAGTTGGCTGAAAAAGAGTCTGATGACGGGGTCTTCAAAATGCTCCGC AGTGATGTTACTCGGTTTCTGACGACTATTCTTATCGGCACAACTGTCGTTAATATTGGAGCAACTGCATTGGTAACGGAGGCAGCCACAACTATATTTG GTGAAGCTGGTGTTAGTGCAGCCACTGGAGTAATGACTGTTGCCATATTGCTTCTTACTGAGATCACTCCAAAAAGTATAGCTGTACACAATGCCACTGA GGTTGCTAGGTTTGTGGTTAGGCCAGTGGCGTGGCTTTCTTTAGTATTATATCCTGTTGGAAGAGTTGTCACATATCTGTCAATGGGAATGCTGAAGATG CTTGGTTTAAAAGGAAGAAGCGAACCATATGTTACAGAAGATGAGTTGAAGCTGATGTTGCGAGGGGCAGAATTGAGTGGGGCAATTGAGGAGGAGGAAC AGGATATGATTGAGAATGTGCTAGAGATTAAGGATACACATGTTAGAGAGGTCATGACACCTCTTGTTGATGTAGTTGCAATTGATGCCAGTGGGACTCT TGTGGATTTTCATGAGTCGTGGGTGACTCATCAATATTCAAGGGTGCCAGTTTTTGAGCAGCGCGTGGATAATATTGTGGGTATTGCCTACGCAATGGAT CTGCTGGATTATGTTCAGAAGGGTGAGCTGCTAGAAAGGACAACTGTGGGAGACATGGCTCACAAACCTACATATTTTGTGCCTGATTCAATGTCAGTCT GGAATCTTCTTAGAGAGTTCCGCATCAGAAAGGTTCACATGGCTGTTGTTCTTAATGAATATGGTGGAACAGTAGGAATAGTAACCCTGGAAGATGTTGT CGAAGAGATTGTAGGTGAAATCTTCGACGAAAATGATTCAAAAGAAGAGATTGAGAAGAAAACCGGCTACATTGTGATGCGAGCAGAGGGAATATACGAC GTTGATGCAAACACATCTATTGATCAACTCTCTGAGGATCTAAATGTCAAAATGCCAGAGGGCCATCAGTACGAGACAGTTTCGGGTTTTATATGCGAGG CATTTGGATATATCCCAAGGACAGGTGAGACCATTAATGTGGTGCTTGAAAAGGAAACTCAAGAAGATGTGGATGAGCATACTGAAGGCAAGTCTGACAG ACAAGAACTAAAGGAAAAGCATCAAATATATAAACTTGAGATATTAGCTGGAAATGCCAGAAAGGTCAGTGCTGTTCGGTTTGAACGGATAAACAATGGT GAGGCACTATTGGAGGCCAACGAAGTAACTCGCTTGGTACCCAGGATCATGAAGAGAAAATGGAGCAGTGATGAAGAGCCCGATGGTAGTGATTATGATG AAGATGATGAAGATTCATTCCAGAAGAGACCAGAGCATAGTCTTTCCGATTCGAATGTAATTGCTGAACATGAAGAGGACAATGAGAGTCCCAGTGGACA GTAG
AA sequence Show only first row Show all	>Potri.001G362100.1 pacid=42789167 polypeptide=Potri.001G362100.1.p locus=Potri.001G362100 ID=Potri.001G362100.1.v4.1 annot-version=v4.1 MVMEIAFESSILGRPIFISGTKTSSFLHYNRVSKIPFKVSQKSYQYPPRISSKLTDFRPYCSSILPRNRSKSSRNVSTDLGTDQNVNLELIKVLLKRGVV FGAMVCGVLVFGCRRVLASEGVVNAGYGVIGQSILLLRNAWPKISQLLRVFKEQGLILAALLGLSAFFSMAETSITTLWPWKVRELAEKESDDGVFKMLR SDVTRFLTTILIGTTVVNIGATALVTEAATTIFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRVVTYLSMGMLKM LGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASGTLVDFHESWVTHQYSRVPVFEQRVDNIVGIAYAMD LLDYVQKGELLERTTVGDMAHKPTYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIEKKTGYIVMRAEGIYD VDANTSIDQLSEDLNVKMPEGHQYETVSGFICEAFGYIPRTGETINVVLEKETQEDVDEHTEGKSDRQELKEKHQIYKLEILAGNARKVSAVRFERINNG EALLEANEVTRLVPRIMKRKWSSDEEPDGSDYDEDDEDSFQKRPEHSLSDSNVIAEHEEDNESPSGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55930			CBS domain-containing protein ...		Potri.001G362100 [exp]	0	1
AT2G47590		PHR2	photolyase/blue-light receptor...		Potri.014G128500 [exp]	11.48	0.6452
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	19.44	0.7097	Pt-FTSH4.1
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Potri.015G095100 [exp]	25.82	0.6451
AT2G30500			Kinase interacting (KIP1-like)...		Potri.013G158100 [exp]	28.19	0.6221
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.009G143000 [exp]	35.77	0.6692
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Potri.004G057600 [exp]	46.28	0.6290	PEX7.1
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.008G179700 [exp]	52.30	0.6660
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.001G002700 [exp]	53.38	0.6568
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	62.76	0.6505
AT1G74210		AtGDPD5	glycerophosphodiester phosphod...		Potri.015G058400 [exp]	73.44	0.6419

Compare expression of checked genes

Potri.001G362100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.