Plant FIBer expression Database

Potri.001G362200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13080 1953 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
AT3G13100 1799 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1)
AT3G13090 1793 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1)
AT1G04120 1366 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
AT3G60160 1347 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
AT3G60970 1175 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1)
AT2G47800 1038 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
AT3G59140 1033 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
AT3G62700 1025 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
AT3G21250 969 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G362300
[exp]
2435 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.T125806
[exp]
2235 / 0 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.003G198401
[exp]
2234 / 0 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.T124606
[exp]
2189 / 0 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.003G197101
[exp]
2188 / 0 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.T124506
[exp]
2184 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.T124406
[exp]
2183 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.003G197100
[exp]
2176 / 0 AT3G13080 1842 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.003G197200
[exp]
2170 / 0 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013201
[exp]
1503 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Lus10022858
[exp]
1384 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Lus10018027
[exp]
1336 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10030718
[exp]
1326 / 0 AT3G13080 1249 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Lus10042023
[exp]
1323 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10030716
[exp]
1258 / 0 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Lus10024965
[exp]
1232 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Lus10027567
[exp]
1070 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10039320
[exp]
1065 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10011498
[exp]
1001 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00005 ABC_tran ABC transporter
CL0241 ABC_membrane PF00664 ABC_membrane ABC transporter transmembrane region
Representative CDS sequence
>Potri.001G362200.2 pacid=42789695 polypeptide=Potri.001G362200.2.p locus=Potri.001G362200 ID=Potri.001G362200.2.v4.1 annot-version=v4.1
ATGCACCTCTTTGATTCAACAAAGCTTGGTCTCTTTTCCAGTCTTTCAAACTCATCCTCTTTAATGTATTCAGGTGCTAGTTTTCTCCTTAATCCCATTT
TCCTGCGTGGGTTTTCTGGTTCATTGCACCTAGTTTTGTTACTTGCCTTAGTCGTCTCATATGCGTGGAAGAAACTCATGAGGGGTGATGGTGGTGAGGG
TTCTGGAGAGAGGTTTAGGAACAACAAGAGGTTTCTGTGTTCTAAGCAAACTCTTTTATGTTGTTTAGGTGTTTCAGTGTTTAATCTTTTCTTGTGTTTG
CTGAGCTACTTTTATTGGTATAAAAATGGATGGTCTGATGATAAACTAGTGAACCTTTTTGATTCAGTGCTTAGAACATTCTCTTGGGGTGCACTTTCTG
TCTATTTGTATACCCTTAATTCAGGTGAGAAAAGGTTCTCATTTTTATTGAGAGTTTGGTGGGTTTTTTATTTCTCAATTTCTTGTTATTGTCTTGTTGT
AGATTTTCTTTTTTATCACAAACATGAGTCCTCAGAGGTACGGTATTTAGTATCTGATATAGTCTCTGTGTTCACTGCTTTGTTTCTTTGTTATGTTGGG
TTCTTGAGACATGAGACTAAGGATAGCCTTCTCGAGCAACCCTTTATGAATGTTGATATTTCTAGCGACACAAGTAATACTCCTACTTTGGAATCAAATA
AGTCAAGGGGGGGTGATGCTGTGACGACTTATGCAAATGCTGGTCCTTTCAGTATTCTTACCTTCTACTGGATGAATTCTCTAATTGCTTTTGGCAATAA
GAAGACTTTGGACCTTGAGGATGTTCCTCAACTAGACAGTCTTGATAGTGTGTTTAGAGGATTCCCAGCTTTTAGAAATAAGCTCGAGTCACATAATGGT
GCTTCTAGTAGAGTTACCCCTTTCAAGCTCGCCAAGACATTGTTCTTGTCAGCTTGGAAGGAAATTCTATGGACAGCTTTGTTGGCAATAATATACACCT
CAGCTTCCTATGTTGGTCCATACCTTATCGACGCTTTTGTTCAATGCCTTGATGGACGAGGAGAATACAAAAATCAGGGATATATTTTAGCTTCAACCTT
TTTCGTTGCAAAGCTTGTAGAGTGCATCTCACAGAGGCACTGGTTCTTTAGGTTGCAACAAATAGGATTTAGGCACCGTGCAGTAACAACCACAATGATT
TACAACAAAGGTTTGACCCTCTCCAATCAGTCAAAGCAGGGCCAAACTAGTGGTGAAATCATCAATATCATGACTGTTGATGCAGACAGAATTGGTGAGT
TTAGTTGGTACATGCACGATCCATGGTTGATCCTATTGCAAGTTGGTTTGGCCTTATTGATACTGTACCAAAATTTGGGGCTTGCATCAGTTGCTGCTTT
TGTTGCAACAATAGTTGTCATGTTGATAAACTATCCTCTGGGTAGATTACAAGAAACGTTTCAAGACAAGTTAATGGACTCAAAAGATAAAAGAATGAGG
GCAACCACAGAGATTTTAAGGAATATGAGAATTCTTAAGCTTCAGGGGTGGGAAATGAAGTTTCTGTCTAAGATTCTTGAACTCAGAGACGTAGAGACAG
GATGGTTGAAGAAATATGTTTATAATTCGGCAATGGTCATGTCTGTCTTCTGGCTAGCTCCTACTCTTGTGGCTGTGGCCACTTTTGGTGCTTGTATGCT
TATAGGCATCCCACTTGAATCAGGGAAAATCTTATCTGCACTTGCAACTTTCAGGGTCCTTCAAATGCCAATCTATAGTCTTCCTGATACACTTTCTATG
ACAGTTCAGACCAAGGTTTCTCTTGACCGAATTGCCTCTTTCCTTTGTCTGGATGACTTGCAGACTGATGTTTTGGAGATGCAACCAATTGGAACCTCTG
ATACAGCAATTGAGATTGCTGATGGAAATTTCTCCTGGGATTTGTCTTCACCTAGTGCAACATTAAAGGATGTTAACGTCAGAGTGCTCCATGGCATGAG
AGTTGCCGTTTGCGGAACAGTTGGTTCAGGCAAGTCAAGCTTACTTTCCTGCGTTTTGGGGGAACTGCACAAGATCTCAGGGACTCTCAAGTTATGTGGG
ACAAAGGCCTATGTTGCCCAGTCTGCCTGGATACAGAGTGGCAAGATTGAAGAGAACATATTGTTTGGTAAGGAGATGGACAGAGAAAGATATGAAAGGA
TACTGGAGGCATGTTCCCTGAAGAAGGACCTTGAAATTATGTCATTTGGTGATCAAACAGTTATTGGTGAGAGGGGAATCAACTTAAGCGGTGGTCAGAA
GCAGAGAATTCAGATAGCACGGGCTCTGTACCAAGACGCTGATATCTATCTATTTGATGACCCTTTCAGTGCTGTGGATGCTCATACAGGATCTCATTTA
TTTAAGGAAGTTTTACTTGGTCTTTTGAGTTCTAAAACAGTTATTTATGTTACTCATCAAGTTGAATTCTTACCTGCGGCTGATCTTATCTTGGTAATGA
AAGATGGAAAGATTGCACAAGCGGGTAAATATGATGACATTCTCTGTTCAGGATCTGACTTTATGGAACTTGTAGGTGCCCACGAGGCAGCTTTATCAGT
GCTTGATTCCAAGCAGAAAGGACCGGCATCAGATACTGATGGGATTGTGCAGAAACAAGGAAAAAACGATTATGAAAATGGTAAATCAGATAAGGTAGCT
GAGCCAAAAGCACAGATCATTCAAGAAGAAGAAAGAGAGACGGGTAGTGTTGGATTTCCTATCTACTGGAACTATATCACAACAGCATATGGAGGAGGTC
TTGTGCCCTTTATATTATTGGCACAGATTCTCTTTCAGGTCCTTCAAATTAGTAGCAACTACTGGATGGCATGGGCAGCTCCTGTGTCAAAGGATGTTAA
ACCTGTTGTCAGTGGATCTACATTAATAATCGTCTATGTCTTGTTCGCTATTGGAAGTTCGATTTGCATTTTAGCTAGAGCCACGCTTCATGCAACAGCA
GGGTACAAAACTGCAACTCTACTCTTCAATAAAATGCATCTGTGCATATTTCGTGCTCCCATGTCCTTTTTCGATGCTACCCCTAGTGGACGAATTATAA
ATAGAGTTTCTACGGATCAAAGTGCAGTTGAAAATCGAATTCCATATCTAATTGGGGCACTTGCCTTCTCAGTTATCCAGCTTCTAGGAATCATTGCAGT
GATGTCACAGGTAGCATGGCAAGTTTTTATCGTTTTCATCCCTGTGATTGCTGCCTGCATCTGGTATCAGAGATATTACATATCTTCTGCAAGAGAGCTT
TCACGTTTGGTTGGAGTATGCAAAGCTCCAGTTATACAACATTTTGCTGAAACAATTTCGGGAGCAACAACTATCAGGAGCTTCGATCAGCAATCAAGAT
TCCAAGAAACAAATATGAAAGTTACAGATGCGTATTCTCGGCCCAAATTTCACATTGCTGGTGCAAGGGAGTGGCTTTGCTTCCGCCTGGATATGTTCTC
TTCTGTTACTTTTGCTTTCTCTTTGGCTTTCTTAGTCTCCTTCCGAAGCAATATTGATCCAGCCATTGCAGGCTTGGCTGTGACATATGGACTCAACCTA
AACATGTTACAAGCTTCAGTGATATGGAATTTATGTGATTGTGAGAACAAAATCATATCTGTAGAGAGAATTATTCAATACATGTCTATTCCTAGTGAGC
CGCCTCTTTTAGTAGAAGCAAACAGGCCAGGCCGTTCTTGGCCATCCCATGGTGAAGTTGATATCAACAATCTGCAGGTCCGTTATGCTCCACAACTGCC
ACTTGTGCTACGCGGTATTACATGCACCTTTCCAGGGGGAAAGAAAACTGGTATTGTAGGGAGAACAGGCAGTGGAAAATCAACTCTCATACAGACTCTT
TTTCGTATTGTCAAACCTGCTGCTGGTCAGATTATGATTGATGGACTTGATATCTCATCGATTGGACTGCATGATTTAAGGTCAAGACTAAGCATTATTC
CTCAGGATCCAACCATGTTTGAAGGGACTATACGAAGTAATCTGGACCCACTTGAAGAGCACACTGATGAACTGATCTGGGAGGCTCTTGACAAGTGCCA
ACTTGGAGACGAAGTTAGGAAGAAAGAAAGAAAGCTAGACTCCACAGTCAACGAGAACGGAGAGAACTGGAGTATGGGTCAGAGGCAGCTAGTTTGTCTT
GGGCGTGTGCTACTCAAGAAAAGTAAGGTGTTAGTCCTTGATGAAGCTACTGCTTCGGTTGACACATCCACCGATAATCTTATCCAGCAAACCCTCAGGC
AACACTTCTCTGACTGTACAGTTATAACCATTGCACATCGGATAACTTCTGTTCTTGACAGTGACATGGTTTTGCTTCTGAGTCACGGGCTCGTTATGGA
ATATGATTCTCCAACAAGATTGTTAGAAAACAAGTCATCATCTTTCGCACAACTTGTTGCAGAGTACACAATCAGGTCAAATGCCAATTGA
AA sequence
>Potri.001G362200.2 pacid=42789695 polypeptide=Potri.001G362200.2.p locus=Potri.001G362200 ID=Potri.001G362200.2.v4.1 annot-version=v4.1
MHLFDSTKLGLFSSLSNSSSLMYSGASFLLNPIFLRGFSGSLHLVLLLALVVSYAWKKLMRGDGGEGSGERFRNNKRFLCSKQTLLCCLGVSVFNLFLCL
LSYFYWYKNGWSDDKLVNLFDSVLRTFSWGALSVYLYTLNSGEKRFSFLLRVWWVFYFSISCYCLVVDFLFYHKHESSEVRYLVSDIVSVFTALFLCYVG
FLRHETKDSLLEQPFMNVDISSDTSNTPTLESNKSRGGDAVTTYANAGPFSILTFYWMNSLIAFGNKKTLDLEDVPQLDSLDSVFRGFPAFRNKLESHNG
ASSRVTPFKLAKTLFLSAWKEILWTALLAIIYTSASYVGPYLIDAFVQCLDGRGEYKNQGYILASTFFVAKLVECISQRHWFFRLQQIGFRHRAVTTTMI
YNKGLTLSNQSKQGQTSGEIINIMTVDADRIGEFSWYMHDPWLILLQVGLALLILYQNLGLASVAAFVATIVVMLINYPLGRLQETFQDKLMDSKDKRMR
ATTEILRNMRILKLQGWEMKFLSKILELRDVETGWLKKYVYNSAMVMSVFWLAPTLVAVATFGACMLIGIPLESGKILSALATFRVLQMPIYSLPDTLSM
TVQTKVSLDRIASFLCLDDLQTDVLEMQPIGTSDTAIEIADGNFSWDLSSPSATLKDVNVRVLHGMRVAVCGTVGSGKSSLLSCVLGELHKISGTLKLCG
TKAYVAQSAWIQSGKIEENILFGKEMDRERYERILEACSLKKDLEIMSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL
FKEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKIAQAGKYDDILCSGSDFMELVGAHEAALSVLDSKQKGPASDTDGIVQKQGKNDYENGKSDKVA
EPKAQIIQEEERETGSVGFPIYWNYITTAYGGGLVPFILLAQILFQVLQISSNYWMAWAAPVSKDVKPVVSGSTLIIVYVLFAIGSSICILARATLHATA
GYKTATLLFNKMHLCIFRAPMSFFDATPSGRIINRVSTDQSAVENRIPYLIGALAFSVIQLLGIIAVMSQVAWQVFIVFIPVIAACIWYQRYYISSAREL
SRLVGVCKAPVIQHFAETISGATTIRSFDQQSRFQETNMKVTDAYSRPKFHIAGAREWLCFRLDMFSSVTFAFSLAFLVSFRSNIDPAIAGLAVTYGLNL
NMLQASVIWNLCDCENKIISVERIIQYMSIPSEPPLLVEANRPGRSWPSHGEVDINNLQVRYAPQLPLVLRGITCTFPGGKKTGIVGRTGSGKSTLIQTL
FRIVKPAAGQIMIDGLDISSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEHTDELIWEALDKCQLGDEVRKKERKLDSTVNENGENWSMGQRQLVCL
GRVLLKKSKVLVLDEATASVDTSTDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLLLSHGLVMEYDSPTRLLENKSSSFAQLVAEYTIRSNAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Potri.001G362200
[exp]
0 1
AT2G38905 Low temperature and salt respo... Potri.010G217200
[exp]
21.63 0.7283
AT1G44960 SNARE associated Golgi protein... Potri.003G159901
[exp]
23.23 0.7345
AT1G17180 ATGSTU25 glutathione S-transferase TAU ... Potri.019G130433
[exp]
26.49 0.7201
AT1G05280 Protein of unknown function (D... Potri.017G039600
[exp]
28.63 0.7228
AT3G18380 SHH2 SAWADEE homeodomain homolog 2,... Potri.011G097500
[exp]
30.74 0.6525
AT1G78340 ATGSTU22 glutathione S-transferase TAU ... Potri.019G130566
[exp]
35.66 0.7128
AT3G29400 ATEXO70E1 exocyst subunit exo70 family p... Potri.017G093833
[exp]
35.70 0.6836
AT4G39090 EMB3005, RD19A,... RESPONSIVE TO DEHYDRATION 19A,... Potri.009G121300
[exp]
40.74 0.6154 Pt-RD19.2
AT4G39955 alpha/beta-Hydrolases superfam... Potri.005G074066
[exp]
47.43 0.6969
AT4G18910 ATNLM2, NIP1;2,... NOD26-LIKE INTRINSIC PROTEIN 2... Potri.011G072100
[exp]
54.74 0.6517

Potri.001G362200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.