Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 228 / 9e-71 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26230 226 / 5e-70 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT5G25120 221 / 3e-68 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT4G36220 221 / 4e-68 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT3G26210 219 / 2e-67 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT1G33730 215 / 3e-67 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G57260 219 / 4e-67 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT5G25140 218 / 4e-67 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26310 218 / 4e-67 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48310 218 / 6e-67 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365100 [exp] 580 / 0 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 571 / 0 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365300 [exp] 565 / 0 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365366 [exp] 505 / 0 AT3G26230 228 / 3e-71 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.008G223500 [exp] 357 / 9e-121 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 353 / 4e-119 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 347 / 7e-117 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 343 / 2e-115 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 342 / 5e-115 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 353 / 5e-119 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034230 [exp] 350 / 5e-118 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10029035 [exp] 348 / 3e-117 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 317 / 3e-105 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10013194 [exp] 313 / 2e-103 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10030708 [exp] 312 / 3e-103 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10002885 [exp] 311 / 9e-103 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10012767 [exp] 308 / 7e-102 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10016599 [exp] 308 / 1e-101 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10004907 [exp] 306 / 1e-101 AT3G26330 330 / 2e-108 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G364900.6 pacid=42791938 polypeptide=Potri.001G364900.6.p locus=Potri.001G364900 ID=Potri.001G364900.6.v4.1 annot-version=v4.1 ATGCTGTTTTCTGTAGCATATAACATCACTACGAGAGCAGCCTTCAGTAAATTGCGGAAAGAGGAAGAGATATTCGTTCCGCTTGTTCAGGGAATAATAC AGGTGGGAGCAGGTTTTAATATAGGTGATCTTTTCCCTTCCATCAAATTGCTTCCATGGATAAGTGGGATGAGATCCAGAATGAAAAGGTTGCATCATGA AGCTGACAGGATACTTGAAAGCATTATCAAAGAGCATAGAGCTCGCAAAGAGGAGGGCAATTCTAGTAACGAGAGTAAAGCAGATGATCTTGTAGATGTT CTTCAAGATCTCCAGGAACATGGGAACCTCGACTTCTCCTTAACTACCGATAATATTAAGGCAGTCATCCTGGACCTTTTCATTGCTGGGACTGAGACAT CATCAACTATTCTAGAATGGGCAATGTCAGAGCTGCTAAAGTACCCTGAAGTGATGGAAAAGGCTCAAACAGAGGTACGAGAGGTCTTTGGCAAAAATGG AAGTGTCGGTGAATTAAATTACTTGAATATGGTTATCAGAGAAACTATGAGATTACACCCTCCTCTCCCTTTGTTGCTTCCAAGAGAATGTCGAGAGGAA TGTGGAATCAACGGATACAATATTCCCATTAAATCCAGAGTCCTAGTTAATGCATGGGCAATCGGAAGGGATTCAAATTATTGGGTTGAAGCTGAGAGAT TCCATCCAGAGAGATTCCTTGATAGCTCGATTGATTATAAAGGGGTTAATTTTGAGTTTACCCCATTTGGTGCTGGAAGAAGGATGTGTCCAGGCATTCT GTTCGGCATAAGTAACGTCGATCTTCTACTAGCAAATTTGCTCTACCATTTTGACTGGAAGCTCCCCGGTGACATGAAGCCAGAAAGTCTAGACATGTCT GAAGCTTTTGGTGCCGCGGTTAGAAGAAAAAATGCACTGCATTTAACTCCTATTTTGCACCATCCTCATCCTGTTAGATCTTGA
AA sequence Show only first row Show all	>Potri.001G364900.6 pacid=42791938 polypeptide=Potri.001G364900.6.p locus=Potri.001G364900 ID=Potri.001G364900.6.v4.1 annot-version=v4.1 MLFSVAYNITTRAAFSKLRKEEEIFVPLVQGIIQVGAGFNIGDLFPSIKLLPWISGMRSRMKRLHHEADRILESIIKEHRARKEEGNSSNESKADDLVDV LQDLQEHGNLDFSLTTDNIKAVILDLFIAGTETSSTILEWAMSELLKYPEVMEKAQTEVREVFGKNGSVGELNYLNMVIRETMRLHPPLPLLLPRECREE CGINGYNIPIKSRVLVNAWAIGRDSNYWVEAERFHPERFLDSSIDYKGVNFEFTPFGAGRRMCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMS EAFGAAVRRKNALHLTPILHHPHPVRS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.001G364900 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	2.00	0.8622
AT5G41761			unknown protein		Potri.012G031900 [exp]	4.00	0.7537
AT1G75717			unknown protein		Potri.005G238400 [exp]	5.91	0.7618
AT4G19980			unknown protein		Potri.001G123300 [exp]	7.34	0.7099
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	9.48	0.7307
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	9.59	0.7624
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	12.96	0.7569
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	14.07	0.7605
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040500 [exp]	19.44	0.7202
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	21.49	0.7256

Compare expression of checked genes

Potri.001G364900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.