Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55600 664 / 0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein AT1G68580 281 / 3e-85 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT2G47230 68 / 1e-11 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT5G58610 67 / 3e-11 PHD finger transcription factor, putative (.1) AT1G09320 64 / 2e-10 agenet domain-containing protein (.1) AT1G26540 64 / 3e-10 Agenet domain-containing protein (.1) AT4G17330 62 / 2e-09 ATG2484-1 G2484-1 protein (.1) AT1G11420 58 / 2e-08 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G03300 53 / 5e-07 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT1G06340 49 / 7e-07 Plant Tudor-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017400 [exp] 550 / 0 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.016G007500 [exp] 523 / 3e-178 AT5G55600 491 / 7e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.008G119400 [exp] 313 / 3e-97 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.010G126700 [exp] 308 / 5e-95 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.005G011100 [exp] 71 / 6e-13 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 71 / 8e-13 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G072600 [exp] 64 / 3e-10 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G192300 [exp] 61 / 2e-09 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.014G117800 [exp] 59 / 9e-09 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007115 [exp] 736 / 0 AT5G55600 606 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10016606 [exp] 724 / 0 AT5G55600 604 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10003906 [exp] 453 / 2e-151 AT5G55600 455 / 3e-152 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10017088 [exp] 69 / 4e-12 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10031429 [exp] 68 / 8e-12 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10010903 [exp] 68 / 9e-12 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10000353 [exp] 68 / 1e-11 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 67 / 4e-11 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10010060 [exp] 66 / 8e-11 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10004508 [exp] 65 / 1e-10 AT2G47230 167 / 9e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [poplar] [flax] BAH BAH domain CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.001G365800.5 pacid=42790708 polypeptide=Potri.001G365800.5.p locus=Potri.001G365800 ID=Potri.001G365800.5.v4.1 annot-version=v4.1 ATGACTGGAAGTGGTCACTGTTTTGTGGAGTGGAAAGAGCAGTTTATTTCGCAGGAGCGTGGAAATCGTGTGGTTCACTATTTCCTGAAGGATTCTGCCG GAGAATCTATCATTGCCGTTGTGGGAACTGAGCGGAGTGTTAGGCATATGTTCTATGTGGTTGCTGAGGAGTTTGTGCAGGTTTACGGTGCTGAAAATTC CATTCATGCTGGTTTCAAGTGGAGGTCAAGAAGGGAGGTTGTGGATTGGCTTACATCAATGCTATCAAAGCAGCATGTACAGGGTGATGGATCCAAAACA CTACAAGGTGTAGAATCAGTAAATGGGCTTGGTGGTCAACATATGCAGGGCTGTCTTTTGAAAAATCCCAGTGGACATGATTCAGACATCGTGTGGTCAG GCATTGCATGGACATGTGGGAAACAACTGAAGCATTATCCTGCATTCTGCAGGAATGCCACTACAATAGCAATCCAATCGTTTGTCTTTGTCATGGCTAA AGGACAGAATCATTATCTTGCTTACTTGGAAGATATGTATGAAGACAAGAGGGGACAGAAAAAAGTAAAAGTGAGGTGGTTTCACCACAGTGAGGAAGTC AAGGGTGTAGTTCCTCTAAGAAATGCTCACCCACAAGAAGTTTTTATCACACCTTATTCACAAGTCATAAGTGCAGAGTGTGTTGATGGTCCTGCCATAG TCTTAACTCGTGAACATTATGAGGAATGTTTTGCTGCTTTTCCTGATGCTTTATCAACGAGAATACATTTGTGCTTTAGGCAATTTAGAAGCAAAAAAGT AAAGCCCTTTGATTTGAGTAAATTGCGTGGCTATTTTGATCAACCTATTCTCTCTTGTTTGAATTCCAAAGCCTTTCTAGGGGCTGAGCGCATAGCCTGT GGACTAACTGAAGAAGATGAAGTATTGAATCCAAGCGAGAACATAAAGCTGGGAGCCAAGAGGACCAGAAGCGGCAGTGTGTCTGAAGCATTTGTGACAG ATCATTTAGGAGTTGGAGTTTCTGGTAGTCAGATTATGGCTTTTGACTCGTCATACCTGAACTTAAGATATGGTTGGTATAGCCATCTATTTAAGGTTGA TCAAAAGATTGAGCTGTTGTGCCAAGATAGTGGTATACGGGGTTGCTGGTTCAGGTGTACAGTCTTGCAGGTGTCTCGAAAACAGATAAAAATACAATAT GATGATGTGCAGGATGAAGATGAGTATGGCAATCTTGAGGAATGGGTCCCAGCTTTCAAATTGGCTGTGGCTGATAAACTTGGCATGAGGCGCTTAGGCC GCCCAACAATGCGACCAGCCCCTCCTCCGAATGAACAAACAGACCCTGCTCTCGAAGTTGGGTCTGCAGTGGATGCATGGTGGAGCGATGGGTGGTGGGA AGGTGTAGTAACTAAAATCGATAACAATGGTGGTGATGTTCTGCAAGTTTACTTTCCAGGTGAAAACTTATTTTTGGACATGCACAAAAAGGATGTACGA ATTTCCAGAGATTGGGTGGGCAATCAGTGGATTGATATTCAGGCAAAACCTGACATACTCTCAGCCATATCGGCTACAACTAGCCCTGAAACAAAAACAT CCATTTCCTTGATGATTAACAAGGACCTGGTATCTGATCTTGTTGCTATGTCTTGTGTCGAAGTTCCTACCAGTGCTAAACCTAATACTATTGAAGAGAG AAAACCTGAGTTTGCTCTGTTAAGTGGTTCTGATAGCCATCTTGAAGCCACGGAATGTGTTGACCGTGTGATGCCTCCAACACCAGGTTCCATAGGCAAC AAGGATGGTTGTGAAGACATCAATATCAGTCATGGTAAAGGTGAAGTTGCAGGTGATGATGAAGTTCAGGGCAATGGTCAGGTTGAAGTAGTTGGTGATG TTAATGACTGTGCTGACAAGATAGATGTGGAAGTCTCGGAGACTTCTGAGAAGAATAGTAAAACTACAGAACTCATGGAAGTGATGGCATAA
AA sequence Show only first row Show all	>Potri.001G365800.5 pacid=42790708 polypeptide=Potri.001G365800.5.p locus=Potri.001G365800 ID=Potri.001G365800.5.v4.1 annot-version=v4.1 MTGSGHCFVEWKEQFISQERGNRVVHYFLKDSAGESIIAVVGTERSVRHMFYVVAEEFVQVYGAENSIHAGFKWRSRREVVDWLTSMLSKQHVQGDGSKT LQGVESVNGLGGQHMQGCLLKNPSGHDSDIVWSGIAWTCGKQLKHYPAFCRNATTIAIQSFVFVMAKGQNHYLAYLEDMYEDKRGQKKVKVRWFHHSEEV KGVVPLRNAHPQEVFITPYSQVISAECVDGPAIVLTREHYEECFAAFPDALSTRIHLCFRQFRSKKVKPFDLSKLRGYFDQPILSCLNSKAFLGAERIAC GLTEEDEVLNPSENIKLGAKRTRSGSVSEAFVTDHLGVGVSGSQIMAFDSSYLNLRYGWYSHLFKVDQKIELLCQDSGIRGCWFRCTVLQVSRKQIKIQY DDVQDEDEYGNLEEWVPAFKLAVADKLGMRRLGRPTMRPAPPPNEQTDPALEVGSAVDAWWSDGWWEGVVTKIDNNGGDVLQVYFPGENLFLDMHKKDVR ISRDWVGNQWIDIQAKPDILSAISATTSPETKTSISLMINKDLVSDLVAMSCVEVPTSAKPNTIEERKPEFALLSGSDSHLEATECVDRVMPPTPGSIGN KDGCEDINISHGKGEVAGDDEVQGNGQVEVVGDVNDCADKIDVEVSETSEKNSKTTELMEVMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	0	1
AT3G17740			unknown protein		Potri.015G033300 [exp]	1.41	0.9246
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Potri.006G085700 [exp]	1.41	0.9068
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.006G201100 [exp]	5.65	0.8607
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	5.91	0.8804
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Potri.017G092600 [exp]	6.32	0.8834
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	7.74	0.8907
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	7.74	0.8829
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	9.38	0.8777
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	9.38	0.8501
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	9.64	0.8944

Compare expression of checked genes

Potri.001G365800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.