Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13130 64 / 4e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007400 [exp] 45 / 1e-05 AT3G13130 60 / 4e-11 unknown protein Potri.014G166900 [exp] 44 / 4e-05 AT2G04515 52 / 1e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004415 [exp] 69 / 1e-13 AT3G13130 54 / 1e-08 unknown protein Lus10016611 [exp] 53 / 3e-08 AT3G13130 62 / 1e-11 unknown protein Lus10012341 [exp] 43 / 8e-05 AT3G13130 71 / 7e-15 unknown protein Lus10038793 [exp] 40 / 0.0009 AT3G13130 59 / 1e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G366500.1 pacid=42788848 polypeptide=Potri.001G366500.1.p locus=Potri.001G366500 ID=Potri.001G366500.1.v4.1 annot-version=v4.1 ATGAACCGAGCTAAGCATCCAAACCTACGAGTCCTGAGTAAGCTAACAGAGTCTCGGATTCTAAAGAAAATAACCCAATTCCTACTCTCAGTTTCAGTGT TTTCCTTGCTTTTATCTAATTATTCCTCTGGGCCTTCTTTCCTTCATTCCTTGTACTTCTACTTGTCTACAGTCCCTGTCCAGTTGTTTACCCATACCTT AGACAAGAACTGCATCTTCCTCCTCTGCAATGGACTCCTAGTTTTCGTCGCTAGATACTCGGGTTTGGCCCCCACTATTGATGATCATCAGTCTTTCAAG AAGTATGAAGATGCCACATCGGAGTCTAGAATGCCAGTGCAGCAGGGGGATGGATCAGGTTTGGTGGAGAATGTTGATGGTTTCCTGCAAGAAAACATTG CTGTCACGAAAGAAGATGGGTTCGTGAATGATAATGATCATGGACGAACAGAAGATAGAGAAATTGAGGAGCTCATCGTGGGAGATCGAGAAGAAAAGGA TGATGACAAGGGAGATGGAGGAATTGGGTTCTTGATTATTGGGAAAGAAGGAGACCATGGAAGTGAACTTTCTCTTCAAGGACACGAGGAGGTAGAGTCC TTGAATGATGAGGAATTCCATGCCACTACTCAAGAAGAATATCAAGCAGAATATTATGTCGACGATGGTGAAGAAAATGGAGTGCTGAGTACACAAGAGT TGAACGAGAAGTTTGAAGAATTCATTAGAAAGACGAAAGAAGAGATAAGAACTGAAGCTCAACAACAATATCTAGTCATGGCTAATTAA
AA sequence Show only first row Show all	>Potri.001G366500.1 pacid=42788848 polypeptide=Potri.001G366500.1.p locus=Potri.001G366500 ID=Potri.001G366500.1.v4.1 annot-version=v4.1 MNRAKHPNLRVLSKLTESRILKKITQFLLSVSVFSLLLSNYSSGPSFLHSLYFYLSTVPVQLFTHTLDKNCIFLLCNGLLVFVARYSGLAPTIDDHQSFK KYEDATSESRMPVQQGDGSGLVENVDGFLQENIAVTKEDGFVNDNDHGRTEDREIEELIVGDREEKDDDKGDGGIGFLIIGKEGDHGSELSLQGHEEVES LNDEEFHATTQEEYQAEYYVDDGEENGVLSTQELNEKFEEFIRKTKEEIRTEAQQQYLVMAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13130			unknown protein		Potri.001G366500 [exp]	0	1
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.004G173800 [exp]	3.74	0.9154	Pt-ADF5.2
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	4.58	0.9449
					Potri.011G057400 [exp]	6.63	0.9203
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	8.00	0.9330
AT3G52500			Eukaryotic aspartyl protease f...		Potri.006G204700 [exp]	8.60	0.8778
AT5G14550			Core-2/I-branching beta-1,6-N-...		Potri.001G348400 [exp]	12.24	0.9168
AT2G03200			Eukaryotic aspartyl protease f...		Potri.001G306200 [exp]	14.83	0.9174
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	15.77	0.9234
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	17.02	0.9101
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Potri.009G052700 [exp]	20.34	0.8897	CPK7.1

Compare expression of checked genes

Potri.001G366500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.