Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13170 499 / 3e-178 ATSPO11-1 Spo11/DNA topoisomerase VI, subunit A protein (.1) AT5G02820 208 / 2e-63 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) AT1G63990 143 / 4e-39 SPO11-2 sporulation 11-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132600 [exp] 206 / 1e-62 AT5G02820 700 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G099100 [exp] 137 / 8e-37 AT1G63990 603 / 0.0 sporulation 11-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004416 [exp] 479 / 2e-170 AT3G13170 479 / 2e-170 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10016612 [exp] 426 / 3e-146 AT3G13170 423 / 7e-145 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10003996 [exp] 207 / 5e-63 AT5G02820 720 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10015052 [exp] 123 / 3e-32 AT5G02820 495 / 2e-176 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10024675 [exp] 101 / 5e-25 AT1G63990 287 / 5e-97 sporulation 11-2 (.1) Lus10032302 [exp] 77 / 2e-16 AT1G63990 253 / 8e-84 sporulation 11-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04406 [poplar] [flax] TP6A_N Type IIB DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Potri.001G366700.1 pacid=42790366 polypeptide=Potri.001G366700.1.p locus=Potri.001G366700 ID=Potri.001G366700.1.v4.1 annot-version=v4.1 ATGGAGAGAAATGCAAGCTCAAGAGCTTTACTCTCAAAAATCAAAGATTTGACTACATCATTAGTGAAAGAGCTAAGCGAGGGACGATCTCCTAACATTT GCATCCACAAATTTAGAAACTACTGCACCGATCCCAATTCAAACTGCTTGTGCAGCTCTGATTTGCCTAAGGGGCAACAAGTTCTCACACTTACGAGACA ATGTCATGCGTGTAGAATAGATGTCTTGCTGAGAGTGCTGGTGATTGTTCAGAAACTTCTGCAAGAGAACCGACATGGGTCTAAGAGAGATATATATTAC ATGCACCCATCTGTGTTTTCAGAACAGTCTGTCGTGGACCGCGCAATTAATGACATATGCATCCTTCTGCAATGCAGTCGTCACAACCTAAATGTGGTCT CTGTTGGAAACGGGTTGGTAATGGGATGGTTACAGTTCTTGGAAGCTGGGAGGAAATTTGATTGCATAAGTTCTCCTACCACTGCCTATACCATCCCTGT GCACGTTGAGGAAGTCAAAGATATTGTCAGTGTTGCCAACTACATACTCATTGTGGAGAAGGAATCAGTATTCCAGCGTTTAGCAAATGATAAGTTCTGT AATGCAAACCGCTGTATTGTGATCACTGGAAGAGGGTATCCAGATATTCCCACCAGAAGGTTCCTGCGGCTACTTGTTGAGAAGCTGTGTCTGCCTGTCT ACTGTTTAGTAGATTGTGATCCATATGGCTTTGACATCCTGACTACCTATCGATTTGGTTCCATGCAAATGGCATATGATGCAAAAATTTTGCGTGTCCC GGAGGTACAATGGCTTGGAGCTTTTCCTTCGGATTTTGAGAAATATGATCTTCCGCAACAGTGTTTGCTCCCATTGACAGCAGAGGACAAGAGAAGAACC GAGACTATGTTACTCAGATGCTACCTTCAAAAGGAAGTGCCGGAATGGAGGTTGGAGCTAGAGCTAATGTTGCAAAAGGGAGTAAAATTCGAGATTGAAG CATTTTCTGTGCACACCCTTTCCTTCTTGTCAGAGCAGTACATACCATCAAAGATTCCGAAAGTTGAAGTGCTCCCTGGAAACAACATCAAGAGTTGA
AA sequence Show only first row Show all	>Potri.001G366700.1 pacid=42790366 polypeptide=Potri.001G366700.1.p locus=Potri.001G366700 ID=Potri.001G366700.1.v4.1 annot-version=v4.1 MERNASSRALLSKIKDLTTSLVKELSEGRSPNICIHKFRNYCTDPNSNCLCSSDLPKGQQVLTLTRQCHACRIDVLLRVLVIVQKLLQENRHGSKRDIYY MHPSVFSEQSVVDRAINDICILLQCSRHNLNVVSVGNGLVMGWLQFLEAGRKFDCISSPTTAYTIPVHVEEVKDIVSVANYILIVEKESVFQRLANDKFC NANRCIVITGRGYPDIPTRRFLRLLVEKLCLPVYCLVDCDPYGFDILTTYRFGSMQMAYDAKILRVPEVQWLGAFPSDFEKYDLPQQCLLPLTAEDKRRT ETMLLRCYLQKEVPEWRLELELMLQKGVKFEIEAFSVHTLSFLSEQYIPSKIPKVEVLPGNNIKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	0	1
					Potri.015G116300 [exp]	1.00	0.8423
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.008G142301 [exp]	2.00	0.7880
AT1G06590			unknown protein		Potri.004G081200 [exp]	5.19	0.7045
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	5.65	0.7376	ARL1.3
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	7.34	0.7279
AT3G14470			NB-ARC domain-containing disea...		Potri.006G273900 [exp]	7.54	0.7508
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	8.66	0.6854
AT3G45740			hydrolase family protein / HAD...		Potri.008G045700 [exp]	11.61	0.7289
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.017G115350 [exp]	18.89	0.6817
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.008G075900 [exp]	21.35	0.6804	DCL903

Compare expression of checked genes

Potri.001G366700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.