Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55630 370 / 1e-127 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT4G01840 186 / 3e-55 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT5G46370 179 / 2e-52 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT4G18160 179 / 4e-52 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT1G02510 160 / 6e-47 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G46360 82 / 1e-17 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004600 [exp] 538 / 0 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 468 / 7e-167 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 363 / 3e-125 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.014G113700 [exp] 211 / 6e-65 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.001G352500 [exp] 207 / 3e-63 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G187600 [exp] 198 / 4e-60 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.005G203000 [exp] 190 / 6e-57 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.011G079100 [exp] 189 / 3e-56 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G059200 [exp] 181 / 2e-53 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004417 [exp] 356 / 4e-122 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10001912 [exp] 328 / 4e-111 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 312 / 2e-106 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 251 / 4e-83 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004611 [exp] 165 / 6e-47 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10015265 [exp] 162 / 3e-44 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10004525 [exp] 159 / 3e-44 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10004538 [exp] 144 / 9e-40 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10029261 [exp] 74 / 4e-16 ND 64 / 2e-14
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Potri.001G366800.4 pacid=42788338 polypeptide=Potri.001G366800.4.p locus=Potri.001G366800 ID=Potri.001G366800.4.v4.1 annot-version=v4.1 ATGGCTTGCAATGGTGCAAAAAAGCCCTTGCTGTCAGGATTGGTGGATTCCACCTCTCCAAGAATTGATGAATGTACTCCCTACAGAAGAAGGTTTCGCC GTGTTAAAAGTGCTCCTGTAACAGAGCTTGTTCCTTCAGATATTAGTGGCAATGGACCAATTCCACGTTATGAATCCTTTTTTGGGGGACGTCACCAGAG CCTGAAGCAAGTAGCTGTATTCTTGGCTGTCTACTTGGGTCTTGGCACTCTATGTTTTTATGTTGTCAGGGGTGATATCAAAGGGAAGAAATCAAATCCA ATTCTTGATTCTTTATATTTTTGTATCGTAACGATGACCACTGTAGGATACGGAGACCTGGTGCCTGATAGTGCTCCTGTGAAATTACTTGCCTGTGTTT TTGTCTTCACAGGGATGCTTCTTATTGGATTGATACTCAGCAAAGCAGCAGACTATTTGGTGGAGAAGCAGGAAATATTACTGATTAAAGCTCTCCGCAT GCACCAAAAACTTGATCCAGCTGCATTTCTTAAGGAAATTGAAACCAACAAGGTCAAATACAAATGCTATTTGGCCATAATTATTCTTTCAGTGCTTATG CTGGTTGGAACCATTTTCCTATACATGGTTGAGGACTTGGACATCATTGATGCTTTCTACTGTGTCTGCTCTACCGTTACAACTCTAGGTTATGGAGACA AGAGCTTCTCAACTGTATATGGTCGTATGTTTGCTGTATTTTGGATACTGACGGGTACTATTGCTTTAGGCCAGTTATTTCTTTACATTGCTGAGCTATT CACTGAAAGCAGACAGAGGGCATTGGTGAACTGGGTTCTTACCAGAAGGATGACCCATTTAGATTTGGAGGCAGCAGACATAGATGATGATGGTGTTGTT GGGGCTGCCGAGTTCGTTGTATACAAGCTTAAAGAGATGGGAAAGATCAGCGAAGAAGATATTGCACTAGTAATGAAGGAGTTTGAGGATCTTGATGTTG ATCAATCTGGAACCTTGTCAGCTTCTGATATCATGGCACAGGCAACTCAAACACACAAGTGA
AA sequence Show only first row Show all	>Potri.001G366800.4 pacid=42788338 polypeptide=Potri.001G366800.4.p locus=Potri.001G366800 ID=Potri.001G366800.4.v4.1 annot-version=v4.1 MACNGAKKPLLSGLVDSTSPRIDECTPYRRRFRRVKSAPVTELVPSDISGNGPIPRYESFFGGRHQSLKQVAVFLAVYLGLGTLCFYVVRGDIKGKKSNP ILDSLYFCIVTMTTVGYGDLVPDSAPVKLLACVFVFTGMLLIGLILSKAADYLVEKQEILLIKALRMHQKLDPAAFLKEIETNKVKYKCYLAIIILSVLM LVGTIFLYMVEDLDIIDAFYCVCSTVTTLGYGDKSFSTVYGRMFAVFWILTGTIALGQLFLYIAELFTESRQRALVNWVLTRRMTHLDLEAADIDDDGVV GAAEFVVYKLKEMGKISEEDIALVMKEFEDLDVDQSGTLSASDIMAQATQTHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.001G366800 [exp]	0	1
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	5.09	0.8753
AT1G71050		HIPP20	heavy metal associated isopren...		Potri.001G322401 [exp]	5.56	0.8042
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Potri.008G195500 [exp]	11.53	0.8122
AT1G35780			unknown protein		Potri.005G165500 [exp]	14.21	0.8520
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	14.89	0.8461
AT3G60800			DHHC-type zinc finger family p...		Potri.002G147300 [exp]	18.73	0.8054
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.005G020400 [exp]	19.26	0.7894	ALPHA.10
AT2G12400			unknown protein		Potri.018G120200 [exp]	20.39	0.8055
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Potri.001G138100 [exp]	21.79	0.8440
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	24.08	0.8457	Pt-ARPC1.1

Compare expression of checked genes

Potri.001G366800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.