Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55880 605 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) AT5G28030 125 / 2e-32 DES1 L-cysteine desulfhydrase 1 (.1.2) AT5G28020 125 / 2e-32 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT3G04940 117 / 2e-29 ATCYSD1 cysteine synthase D1 (.1) AT4G14880 115 / 7e-29 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G61440 110 / 1e-26 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT2G43750 109 / 2e-26 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G22460 104 / 5e-25 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G59760 105 / 2e-24 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G03630 99 / 1e-22 CS26 cysteine synthase 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048132 [exp] 126 / 9e-33 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.005G048066 [exp] 124 / 6e-32 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.013G035200 [exp] 121 / 5e-31 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.014G086300 [exp] 121 / 1e-30 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.005G048200 [exp] 119 / 3e-30 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.002G160800 [exp] 116 / 8e-29 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.005G048400 [exp] 115 / 1e-28 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 114 / 1e-28 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 114 / 3e-28 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043164 [exp] 643 / 0 AT1G55880 625 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) Lus10032583 [exp] 628 / 0 AT1G55880 609 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) Lus10019002 [exp] 127 / 5e-33 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10014765 [exp] 119 / 8e-30 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10015947 [exp] 109 / 1e-26 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 108 / 2e-26 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10025589 [exp] 108 / 5e-26 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10027056 [exp] 108 / 5e-26 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10009521 [exp] 98 / 5e-22 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10036370 [exp] 91 / 4e-20 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G367000.1 pacid=42793343 polypeptide=Potri.001G367000.1.p locus=Potri.001G367000 ID=Potri.001G367000.1.v4.1 annot-version=v4.1 ATGGCATCTGTAAGAACCACAGGTGCTTTTGTAGCAGCCATCTCTATGTCCATAGTATTGTTCTCTTACTTTCTATCCAATTACAGATCCAAAAGAAAGA CTCCTTCCCCCCTTTCAAAGAATAAAAAACCAAGAAACGGACTCATTCATGCTGTTGGTAACACTCCCTTGATTAGAATTAATAGCCTCTCTGAAGCTAC TGGTTGTGAAATTCTTGGGAAGTGCGAGTTTCTGAATCCAGGAGGGAGTGTTAAAGATAGGGTTGCTGTGAAAATAATTGAAGAGGCACTGGAATCTGGC CAGCTAGTTTGTGGTGGAGTTGTTACTGAGGGAAGTGCTGGAAGCACTGCAATTAGCCTGGCTACAGTGGCTCCTGCCTATGGATGCAAATGCCATGTCA TTATCCCAGATGATGTTGCTATTGAGAAGTCTCAAATTCTCGAAGCTCTGGGAGCTACTGTTGAAAGAGTGCGACCGGTTTCAATTACACACAGAGACCA CTATGTCAACATTGCTAGGAGACGGGCACTGGAAGCAAATGAATTAGCATCAAAGCTTAGAAAAACTGAAAAGATTGATGGCAAAGTCTTAGAGCAAATT AACGGTTGCATTTCTGATGGAGAGAAAAAAGGTTCTATTTTTTCAAGTTACTGTAGTGGTGGATTTTTTGCTGACCAGTTTGAAAACTTGGCAAATTTCC GGGCCCACTATCAGGGCACTGGACCTGAGATATGGGAACAAAGTGGTTGTAGTTTAGATTCATTTGTGGCAGCTGCAGGCACAGGCGGCACTGTAGCTGG TATTTCAAGTTTTCTCCAGGAAAAGAATCCGAACATCAAGTGCTTCCTCATAGATCCGCCTGGTTCTGGTTTGTTCAACAAGGTAACAAGGGGAGTGATG TACACGAGAGAGGAAGCTGAAGGAAAAAGGTTAAAGAACCCATTTGACACAATAACGGAAGGAATTGGAATCAATAGATTAACACAAAATTTTAAGATGG CAAAACTTGACGGAGCCTACAGAGGCACAGACAAAGAGGCTGTTGAAATGTCAAGGTATCTTTTGAAGAATGATGGCCTTTTTCTGGGGAGTTCTTCAGC CATGAACTGTGTTGGAGCTGTTAGAGTGGCACAATCACTTGGTCCTGGTCACACAATTGTGACCATTCTGTGTGATAGTGGGATGAGGCATCTGAGTAAG TTTCATGATGCTCAGTATCTGTCTGAGCATGGTTTGACACCCACAGCAACTGGATTAGAGTTCCTTGGTATTTAA
AA sequence Show only first row Show all	>Potri.001G367000.1 pacid=42793343 polypeptide=Potri.001G367000.1.p locus=Potri.001G367000 ID=Potri.001G367000.1.v4.1 annot-version=v4.1 MASVRTTGAFVAAISMSIVLFSYFLSNYRSKRKTPSPLSKNKKPRNGLIHAVGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESG QLVCGGVVTEGSAGSTAISLATVAPAYGCKCHVIIPDDVAIEKSQILEALGATVERVRPVSITHRDHYVNIARRRALEANELASKLRKTEKIDGKVLEQI NGCISDGEKKGSIFSSYCSGGFFADQFENLANFRAHYQGTGPEIWEQSGCSLDSFVAAAGTGGTVAGISSFLQEKNPNIKCFLIDPPGSGLFNKVTRGVM YTREEAEGKRLKNPFDTITEGIGINRLTQNFKMAKLDGAYRGTDKEAVEMSRYLLKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK FHDAQYLSEHGLTPTATGLEFLGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55880			Pyridoxal-5'-phosphate-depende...		Potri.001G367000 [exp]	0	1
AT5G12320			ankyrin repeat family protein ...		Potri.001G276100 [exp]	3.46	0.7683
AT4G13720			Inosine triphosphate pyrophosp...		Potri.001G052400 [exp]	6.48	0.7507
AT5G13070			MSF1-like family protein (.1)		Potri.001G018500 [exp]	7.34	0.7271
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	7.41	0.7381
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Potri.007G145800 [exp]	10.58	0.7482	TEJ.1
AT5G17210			Protein of unknown function (D...		Potri.019G048300 [exp]	12.72	0.7040
AT4G38495			unknown protein		Potri.016G127200 [exp]	13.26	0.7649
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.005G221600 [exp]	13.49	0.7160	BET11.1
AT1G79390			unknown protein		Potri.010G174700 [exp]	13.85	0.7107
AT3G29130			unknown protein		Potri.011G098200 [exp]	18.89	0.6782

Compare expression of checked genes

Potri.001G367000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.