Plant FIBer expression Database

Potri.001G367600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G367600.3 pacid=42791826 polypeptide=Potri.001G367600.3.p locus=Potri.001G367600 ID=Potri.001G367600.3.v4.1 annot-version=v4.1
ATGTTGCAGCATATGCACAGCGTTCTTCTTCTTCTTGTTTTTGCTTTCTGTATTTCAAACTCTAATTTTACAGTAAATGGGGACAATGCGCCTGCGCCAT
CGCCCACATCCTCATCAATTCCAAAATCACCCTCTAGTTCTTCTCCTTCTCCGTCCACAACTTCACCCCCATCGTCCCCTTCAAAATCACCGGCTACATC
TCCATCCACTTCCCCACCAACTCTTCCCGTCTCCCCTTCAAAATCTCCGGCCACATCCCCATCCCCATCCACTTCCCTACCAACTATTCCCGTCTCCCCT
TCAAAATCTCCGGCCACATCCCCATCCCCATCCACTTCCCTACCAACTATTCCCGTCTCCCCTTCAAAATCTCCGGCTACATCTCGATCTTCATCCACTT
CCCCACCAAGTCCTACCGTCTCCCCTCCAACGCCCTCGCCAAATGCCGCTGCCCCATCTGGCTCTCCTCCGGTTTCATCACCAGCGGTTTCCACTCCGGT
GACTGCTCCTACATTGGCACCACTTGGGGCTCCGCCAATGTCGACAGAGGGTCCGGTTACTGCAGCGACTCCGGAGGCATCGGCAAGCATTCCATCAAGT
TCTGCGACGCCAGCGGAGGCCCCTATGGTTTTCCCTTCCAGTAGTAGCCCTCCGAGCCCGTCTACTGAGAGTAGTATGTCACCAGAAACTGCAAAGGTTC
CGTCGGTTAATGACGAGTCGGGTTCAAGGTCCTTGTATGAGGTTGGGGTCATTTTGAGTGGGTTGGTGGGTGGGGCTGCCCTGGCTTTGGCAATATAA
AA sequence
>Potri.001G367600.3 pacid=42791826 polypeptide=Potri.001G367600.3.p locus=Potri.001G367600 ID=Potri.001G367600.3.v4.1 annot-version=v4.1
MLQHMHSVLLLLVFAFCISNSNFTVNGDNAPAPSPTSSSIPKSPSSSSPSPSTTSPPSSPSKSPATSPSTSPPTLPVSPSKSPATSPSPSTSLPTIPVSP
SKSPATSPSPSTSLPTIPVSPSKSPATSRSSSTSPPSPTVSPPTPSPNAAAPSGSPPVSSPAVSTPVTAPTLAPLGAPPMSTEGPVTAATPEASASIPSS
SATPAEAPMVFPSSSSPPSPSTESSMSPETAKVPSVNDESGSRSLYEVGVILSGLVGGAALALAI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G367600
[exp]
0 1
AT3G17640 Leucine-rich repeat (LRR) fami... Potri.011G023500
[exp]
2.44 0.9146
AT5G16250 unknown protein Potri.019G113300
[exp]
17.05 0.9140
AT5G14180 MPL1 Myzus persicae-induced lipase ... Potri.001G332300
[exp]
19.20 0.8344
AT5G66230 Chalcone-flavanone isomerase f... Potri.007G057800
[exp]
22.80 0.9093
AT4G30410 sequence-specific DNA binding ... Potri.006G177000
[exp]
23.87 0.8473
AT1G66250 O-Glycosyl hydrolases family 1... Potri.004G086400
[exp]
26.49 0.9068
AT2G20590 Reticulon family protein (.1.2... Potri.007G137700
[exp]
27.38 0.9075
AT4G08330 unknown protein Potri.005G070600
[exp]
31.17 0.9050
Potri.006G190400
[exp]
31.96 0.9058
AT4G31840 AtENODL15 early nodulin-like protein 15 ... Potri.006G184100
[exp]
33.04 0.9021

Potri.001G367600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.