Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63180 424 / 2e-148 Pectin lyase-like superfamily protein (.1) AT1G67750 409 / 9e-143 Pectate lyase family protein (.1) AT3G07010 407 / 8e-142 Pectin lyase-like superfamily protein (.1) AT4G13710 401 / 7e-139 Pectin lyase-like superfamily protein (.1.2) AT1G04680 398 / 4e-138 Pectin lyase-like superfamily protein (.1) AT3G27400 396 / 1e-137 Pectin lyase-like superfamily protein (.1) AT4G24780 395 / 3e-137 Pectin lyase-like superfamily protein (.1.2) AT5G55720 392 / 2e-136 Pectin lyase-like superfamily protein (.1) AT5G48900 392 / 4e-136 Pectin lyase-like superfamily protein (.1) AT3G24670 390 / 8e-135 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G093400 [exp] 570 / 0 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 422 / 9e-148 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 419 / 7e-147 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 407 / 2e-141 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 406 / 3e-141 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 406 / 3e-141 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 406 / 4e-141 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 402 / 3e-140 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 398 / 1e-138 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022817 [exp] 408 / 4e-142 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 407 / 9e-142 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 406 / 9e-142 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 406 / 1e-141 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10011758 [exp] 406 / 1e-141 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023679 [exp] 407 / 2e-141 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 406 / 4e-141 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10036946 [exp] 399 / 5e-139 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 395 / 2e-137 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 394 / 9e-137 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.001G367800.1 pacid=42789385 polypeptide=Potri.001G367800.1.p locus=Potri.001G367800 ID=Potri.001G367800.1.v4.1 annot-version=v4.1 ATGCCGGCGTTCTTCTCCCTCTTCCTCCTAGTCATGATCTTACATGCCACTATAGCATTCTCTAGACATCCTCCGGTGAGAATATCAGAAGCAACCAAAT GGAGCTCAACGAGAAGGCAGCTGGGAAAAAACACATGCAGAACTGGCAACCCTATTGATGATTGTTGGAGATGCGACCCAGATTGGGAAACTAACAGGAA AGTGCTAGCTGATTGCGCATTTGGGTTCGGGCGCAATGCTGTGGGAGGACGAGATGGCAACCTCTACGTAGTAACAGATTCCGACAACGATGACCCCGTA AACCCAATTCCAGGCACACTCCGCTATGGTGTCATCCAAGAAGAACCTCTGTGGATCATCTTTGACAAGGACATGGTCATCAACTTGAAGGAAGAACTTT TCATGAATTCACACAAGACTATAGATGGTCGGGGGCAAAACATCCAGATAGCGGATGGTCCTTGCGTAACCATTCGAAACGTCAGTAACATTATCATACA TAACATCTACATACATGGCTGTGTGCCGGGCGGAAACGTCGTGGTAAGAGACTCCACAAATCATCACGGTCTGAGAGGCAAGTCTGATGGGGATGGGATA TCGATATTTGCGGCCAGGGATGTATGGATTGATCATTGTACTCTAGCTAACTGCCGTGATGGACTTATAGATGCTGTATTTGGCTCAACATCTATAACAA TCTCAAACAACTACATGTTCAATCATAACGAAGTTATGCTTATGGGTCACAGTGATGATTTCATCGATGACAAGAACATGCTAGTCACAATTGCCTTCAA TTTCTTTGGTGAAAATCTGGTTCAAAGAATGCCTAGGTGCAGGCATGGTTATTTTCACATTGTGAATAACATATATACTGGTTGGGAGAAGTACGCGATC GGTGGAAGTGCCAGTCCAACAATCAACAGCAAAGGAATGTTTTTATGGCATTAG
AA sequence Show only first row Show all	>Potri.001G367800.1 pacid=42789385 polypeptide=Potri.001G367800.1.p locus=Potri.001G367800 ID=Potri.001G367800.1.v4.1 annot-version=v4.1 MPAFFSLFLLVMILHATIAFSRHPPVRISEATKWSSTRRQLGKNTCRTGNPIDDCWRCDPDWETNRKVLADCAFGFGRNAVGGRDGNLYVVTDSDNDDPV NPIPGTLRYGVIQEEPLWIIFDKDMVINLKEELFMNSHKTIDGRGQNIQIADGPCVTIRNVSNIIIHNIYIHGCVPGGNVVVRDSTNHHGLRGKSDGDGI SIFAARDVWIDHCTLANCRDGLIDAVFGSTSITISNNYMFNHNEVMLMGHSDDFIDDKNMLVTIAFNFFGENLVQRMPRCRHGYFHIVNNIYTGWEKYAI GGSASPTINSKGMFLWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63180			Pectin lyase-like superfamily ...		Potri.001G367800 [exp]	0	1
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G135800 [exp]	2.82	0.9672
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135500 [exp]	4.47	0.9634
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152900 [exp]	8.48	0.9501
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	16.52	0.9504
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004200 [exp]	25.09	0.9468
AT5G38610			Plant invertase/pectin methyle...		Potri.003G086600 [exp]	25.61	0.9285
AT2G32390		GLR6, ATGLR3.5	glutamate receptor 3.5 (.1.2....		Potri.014G152400 [exp]	25.92	0.9414
AT1G75280			NmrA-like negative transcripti...		Potri.013G103850 [exp]	27.38	0.9476
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.004G086600 [exp]	27.49	0.9434	Pt-MALD3.1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065600 [exp]	29.69	0.9374

Compare expression of checked genes

Potri.001G367800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.