Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55730 454 / 8e-159 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G12730 392 / 8e-135 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G45470 275 / 1e-88 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 257 / 1e-81 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G12660 128 / 2e-34 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT3G46550 121 / 2e-30 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G24450 100 / 9e-24 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT4G31370 90 / 3e-20 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT2G20520 64 / 2e-11 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT2G04780 63 / 4e-11 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G093500 [exp] 588 / 0 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G168100 [exp] 407 / 9e-141 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.014G071700 [exp] 277 / 1e-89 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.001G037800 [exp] 140 / 3e-38 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G097000 [exp] 118 / 2e-29 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G174900 [exp] 115 / 3e-28 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G005100 [exp] 108 / 9e-27 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 104 / 3e-25 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G129200 [exp] 63 / 3e-11 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016617 [exp] 536 / 0 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 533 / 0 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001178 [exp] 371 / 3e-126 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 369 / 1e-125 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 366 / 1e-123 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 291 / 4e-96 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10009235 [exp] 273 / 3e-88 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10038004 [exp] 182 / 2e-55 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10040821 [exp] 125 / 1e-31 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 118 / 3e-29 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.001G367900.1 pacid=42787799 polypeptide=Potri.001G367900.1.p locus=Potri.001G367900 ID=Potri.001G367900.1.v4.1 annot-version=v4.1 ATGCAGCTTACTGTACTCCTTTCTCTACTTTTTCTCCTCTCCACCGCCACCACCATCACTTATGGCCACAACATTACTTCCATACTAGGCCAGCACCCAT CTCTCTCCACTTTCAATCACTACCTCACCCTAACCCACCTCGCCGGAGAAATCAATCGGCGTACAACCATCACCGTCTGTGCCGTCGACAACGCAGCCAT GTCTGAAATCCTTTCAAAAAAGCCATCAATCTCCACCATCAAAAACATCCTTTCCCTCCACGTCCTCTTGGATTACTTCGGTACCAAGAAGCTCCACCAG ATAAGAGACGGCACCGCGTTGGCAGCCACCATGTTCCAGGCCACCGGGTCAGCTCCTGGGTCTACCGGGTTCGTTAACATAACGGATGTTAAAGGAGGGA AAGTGGCTTTTGGACCGAAAGATAATGGAGGGAACCTTGATGTGTTTTATGTCAAGTCTGTAGAGGAGATACCCTACAACATTTCAGTTATACAGATCAG TAAGTTGTTGCCATCGGATGTGGCGGCGGCGCCCACACCAGAGCCAAGTGCTATGAATATAACGGATATAATGTCAGCTCATGGGTGTAAGGTTTTTGCT GATACTTTGATTGCAAACCCTGATGCTTCAAAGACATATCAGGACACTATTGATGGAGGATTAACAGTGTTTTGCCCTCTTGACGATCCATTTAAGGCCT TTTTACCAAAATTCAAGAATTTAACAGCTTCTGGCAAAGAGTCACTCCTTCAATTCTTCGGTGTTCCTGTTTATCAGTCATTAGCAATGTTAAAATCCAA CAATGGAATCATGAACACCTTAGCTACAAATGGGGATAAGAAGTTTGATTTCACAGTGCAAAATGATGGCGAGGATGTGACCCTCAAGACAAGGGGTACC ACTGCAAAAATAGTTGGGACTTTGATCGATGAGCAGCCACTTGCTATATACTCCATTGATAAGGTCTTGTTGCCCAAGGAATTGTTTAAAGCAGCACTGA CCCCAGCTCCAGCACCTGCCCCGGAGGAGGCGGCAGATGCACCAAAATCTAGCAAGCATAAGAAGCCCTCCGCCGATGATGCGCCATCAGACTCACCAGC TGATTCACCTGATGGCGACGCAGCAGACCAAACAGCTGATAACAATGCTAGTGTGAGACTTGATGGTGGAAGACTTGTTGCCATGGTATTGAGTTTGTGC TTAGGGCTTTTGATGCTGTAG
AA sequence Show only first row Show all	>Potri.001G367900.1 pacid=42787799 polypeptide=Potri.001G367900.1.p locus=Potri.001G367900 ID=Potri.001G367900.1.v4.1 annot-version=v4.1 MQLTVLLSLLFLLSTATTITYGHNITSILGQHPSLSTFNHYLTLTHLAGEINRRTTITVCAVDNAAMSEILSKKPSISTIKNILSLHVLLDYFGTKKLHQ IRDGTALAATMFQATGSAPGSTGFVNITDVKGGKVAFGPKDNGGNLDVFYVKSVEEIPYNISVIQISKLLPSDVAAAPTPEPSAMNITDIMSAHGCKVFA DTLIANPDASKTYQDTIDGGLTVFCPLDDPFKAFLPKFKNLTASGKESLLQFFGVPVYQSLAMLKSNNGIMNTLATNGDKKFDFTVQNDGEDVTLKTRGT TAKIVGTLIDEQPLAIYSIDKVLLPKELFKAALTPAPAPAPEEAADAPKSSKHKKPSADDAPSDSPADSPDGDAADQTADNNASVRLDGGRLVAMVLSLC LGLLML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.009G097800 [exp]	1.00	0.8663	CYCD3.2
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	2.44	0.7708
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	4.58	0.7207	Pt-CESA1.2
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Potri.001G071000 [exp]	5.47	0.7683	EXGT.1
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	10.95	0.7207	RHG4.2
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055600 [exp]	11.22	0.6992
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	12.04	0.7246
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.005G232600 [exp]	12.36	0.7190	GAL1.7
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.009G086700 [exp]	14.49	0.7180
AT4G05350			RING/U-box superfamily protein...		Potri.019G086500 [exp]	14.86	0.6996

Compare expression of checked genes

Potri.001G367900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.