Plant FIBer expression Database

Potri.001G368100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55760 681 / 0 SRT1 sirtuin 1 (.1)
AT5G09230 105 / 9e-25 AtSRT2, SRT2 sirtuin 2 (.1.2.3.4.5.6.7)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G068400
[exp]
99 / 2e-22 AT5G09230 487 / 4e-173 sirtuin 2 (.1.2.3.4.5.6.7)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016619
[exp]
704 / 0 AT5G55760 682 / 0.0 sirtuin 1 (.1)
Lus10029531
[exp]
94 / 9e-21 AT5G09230 543 / 0.0 sirtuin 2 (.1.2.3.4.5.6.7)
Lus10039614
[exp]
85 / 2e-17 AT5G09230 457 / 7e-161 sirtuin 2 (.1.2.3.4.5.6.7)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0085 FAD_DHS PF02146 SIR2 Sir2 family
Representative CDS sequence
>Potri.001G368100.1 pacid=42787745 polypeptide=Potri.001G368100.1.p locus=Potri.001G368100 ID=Potri.001G368100.1.v4.1 annot-version=v4.1
ATGTCTCTGGGTTATGCAGAAAAGCTTTCTTACATTGAAGATGTGGGCAACGTTGGAATGTCAGAATTCTTCGACTCATCTCATGTTTTGCAAGAAAAAA
TTGAAAGACTTGCTGAGATGATACAAAAGAGCAAGCATCTAGTTGTGTTTACAGGTGCAGGAATATCAACATCTTGTGGCATACCTGATTTTCGAGGTCC
CAAGGGAATTTGGACGTTACAGCGCGAGGGAAAACCATTACCTGAAGCATCGCTACCATTTCATCGAGCAATGCCAAGCATGACACACATGGCTTTGGTT
GAGCTGGAGAAGGCTGGCATTTTAAAGTTTATTATTAGCCAGAATGTCGATGGCCTCCATCTTCGGTCTGGAATACCAAGGGAGAAACTTGCTGAATTAC
ATGGGAATTCCTTCATGGAAGTTTGCCCTTCATGTGGTGTTGAGTATTTTCGGGATTTTGAGGTTGAAACTATTGGGTTGAAGGAGACATCAAGACGCTG
CTCTGATGTCAAATGTGGAGCAAAGCTAAAAGATACAGTTCTTGACTGGGAGGATGCATTGCCCACAAAGGAGATGCTTCCAGCTGAGAAACACTGCAGG
ATGGCTGATGTTGTATTATGTTTGGGGACAAGTTTGCAAATCACTCCTGCATGCAATCTGCCTTTAAAATGTCTCCGAGGTGGGGGAAAGATTATAATTG
TGAATCTTCAGAAAACTCCGAAGGATAAGAAGGCAAGTTTGGTGATCCATGGATTTGTAGACAAGGTTATTGCAGGGGTCATGAACTTGCTCAATTTGAG
GATTGCTCCATATGTCAGGATTGATCTTCTTCAAGTTATCATAACTCAGTCATTGAGTTTAGATGAAAGATATGTGAACTGGAACCTCCGGGTGGCAAGT
ATACATGCACTGAAAGCACCGTTGCCATTCATCGAGTCCATTGAGGTGTCCTTCACAGATGCTCAAAAATACAAAGCGGCTGTGCTACATGACCAGCCAT
TTAACCTAAAAAGGAGGACTGCACCAGCAGAAGCATTTGAAATCCTCTTGAAACTCAACTTCAGTGATGGATGTGGTTGTCCCTCCATCCAAATTAATGT
CCCTGTCAATTTTAAGGTTTCAAGTGACTGCTTTAACCTTGACAAGGAGTCGGCCATACAAAATCTGAAGGAGAGGGCAATTCAAGATTTGTGCTGTGGT
CAGAATGCACTGATCGAAAGAAAGGTCATTTTAGAGCCAAAAACCGAGGTTGCAAACCATGCTTTAGTAACCAACATTAAAGCTTTCAATTCTGATTCTT
GGAGTAATGGTGATGTGAAACATCCAAGAGGGGTTAATGGGACCAAAACATCTCGGAAGCGATCGTTTGGTCGCAAGCGTAAATCGAGATTTTAG
AA sequence
>Potri.001G368100.1 pacid=42787745 polypeptide=Potri.001G368100.1.p locus=Potri.001G368100 ID=Potri.001G368100.1.v4.1 annot-version=v4.1
MSLGYAEKLSYIEDVGNVGMSEFFDSSHVLQEKIERLAEMIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKPLPEASLPFHRAMPSMTHMALV
ELEKAGILKFIISQNVDGLHLRSGIPREKLAELHGNSFMEVCPSCGVEYFRDFEVETIGLKETSRRCSDVKCGAKLKDTVLDWEDALPTKEMLPAEKHCR
MADVVLCLGTSLQITPACNLPLKCLRGGGKIIIVNLQKTPKDKKASLVIHGFVDKVIAGVMNLLNLRIAPYVRIDLLQVIITQSLSLDERYVNWNLRVAS
IHALKAPLPFIESIEVSFTDAQKYKAAVLHDQPFNLKRRTAPAEAFEILLKLNFSDGCGCPSIQINVPVNFKVSSDCFNLDKESAIQNLKERAIQDLCCG
QNALIERKVILEPKTEVANHALVTNIKAFNSDSWSNGDVKHPRGVNGTKTSRKRSFGRKRKSRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G55760 SRT1 sirtuin 1 (.1) Potri.001G368100
[exp]
0 1
AT5G52545 unknown protein Potri.004G079400
[exp]
3.60 0.8366
AT3G44370 Membrane insertion protein, Ox... Potri.009G121800
[exp]
4.89 0.7672
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Potri.006G083201
[exp]
5.65 0.7564
AT2G01930 BBR_BPC BPC1, BBR/BPC1,... basic pentacysteine1 (.1.2) Potri.008G140200
[exp]
11.35 0.7663
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Potri.003G162801
[exp]
12.96 0.7401
AT1G78770 APC6 anaphase promoting complex 6 (... Potri.011G108800
[exp]
13.26 0.7320
AT2G45530 RING/U-box superfamily protein... Potri.001G452800
[exp]
14.83 0.7139
AT1G43580 Sphingomyelin synthetase famil... Potri.002G066900
[exp]
18.16 0.7549
AT2G32940 AGO6 ARGONAUTE 6, Argonaute family ... Potri.014G159400
[exp]
19.07 0.7290 AGO902
AT1G13810 Restriction endonuclease, type... Potri.010G222500
[exp]
19.44 0.7134

Potri.001G368100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.