Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55820 172 / 8e-43 WYR WYRD, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022519 [exp] 442 / 4e-130 AT5G55820 258 / 4e-69 WYRD, unknown protein Lus10016620 [exp] 433 / 9e-125 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03941 [poplar] [flax] INCENP_ARK-bind Inner centromere protein, ARK binding region
Representative CDS sequence Show only first row Show all	>Potri.001G368200.1 pacid=42793501 polypeptide=Potri.001G368200.1.p locus=Potri.001G368200 ID=Potri.001G368200.1.v4.1 annot-version=v4.1 ATGACGACTACGATAGAGAAGCTGTTTCTTCAGATCTTTGAAAGGAAGTTATCGATTTTCGAACAAGTCAAGCACCAAGCCGATCTCTTCGATCACCGCC TCGCCTCTAAATGTGTTCTTGATGGAACTACCCCTCCTCCCTGGCTCCTCTCCCCGTCTCTCTCCTCCCTTCCAAATGAAAATAAAGAGGATCTCATATC AGGACTCTTGCTGCCGCGTCCTCACCCTGCAAACCCTTATTCCACTAGTGCCTACTCAGTACAGCCTGTTATTACTACCAATATCAGTGACCTGCCAAGT GGTTTACACACAGAACTTGGCCTTGTCAACAAAAGATTCGATTCAGGTTATAGACTGTCTGTTTTGTCACAGTTACCTGTTACTGATGGCGTTCAATGTA ACTTAAATGGAGTTCCTGAGCTGGAATTTAATGATGCGTCTCCACAAGATTGTAGAGATGCAAGAATGCCAGACATTGTACCTGATCACAGCCAATCACT GGCGAGGATTCATAGATCCAAATCAAGGCAAAAGGCTCTGGAGCTTCGCAATAGTGTGAAAACGGGTAAAACCTGTCCACGTGCTGAAAATAATGTTGGT TCTTGTACTAGTCGATTTAGAGGGTCTGGGGTTACTTCTCTACAGTTTGACCATGTTGATCAGTCAGAGTCGCTCAAACTTGTCAAGGCAAGTAATAAAA GTTGCGTCGGAGAAGAGGTGAAAGCAGGTGAATGCATGGTAAAGGAAAACTCTAGTGATGTTTACCATGGCAGAAGTACAAGATCTAGAAGTTCTAGACT CAAAGCCAGCTATGTAAGTTCTAGACTTAAAGCCAGCTATGTGAATGAGTCCGGGAATGTGTGCACCTCTACTTGCCTTGCCAAAGAAGATGAACCTAGA GAGTCTATTTCAAAACGACAGCCTAACCAAGTTGATTTGACAGAACTTGTTTCTGTTGTTGGTCATGCAAGTTCTGAAGCACAAATGGAAAATGAAGACA ATCACAGGGGCAATGAAATGGCTAGCATCATGTACTCTGTTGGAGTTCCAAGATATACGAGTTCAAGCCCTCAACCCAACTCTACAAGGAAGCCTCTGGA CATGAATAATTCTTCCTATATCGACAACAAAGACAGTAGGATTAGAGAGTCTATTGATGATCCATCACTGCAGCCCAATTGTATCAATGAGATATCAGAA ATGGCCAAACCTTCATGTGTTATCTCCAATGACAGTTATGGAAGGGTGAAAGCAAAAGTAAGTGATAACTGGAGCAAGGAAAAGGGAAGCGGCCTTTATT TTGGGAGAATAACAAGATCTAGAAGTTCCAGCCAACGAGCTGACTTTGTGAATGAATCTTTGAAGCTGGACGGCTCTTGCGGTAATGCTGAGGAAGAACC AAGGCAGCTTTCCAACCCTGTTGATGACTTTAGGGAATTGGTTAAACCTTTCAACATCACTGATGAAAGTTGTGGAGTGAATGAAAAAATGTTGAACTAC CAGAACAGTGAAGAGAGAACTGATTCTTATTATGGAAAAATAACAAGATCCAGAAATTCCAATCAGCAACTTGGAGTTGATGGGCTTCCAATACTGGATA CTTCATCTAATATAGCAAAGGATAATGATGGTTCACTCTCACAGTCCTTCGGCAGATCATCACAACCTCATCAACCATTGAATCAGGTTAGAGAAGAAGG TGTTGACCTCCAGGAAGTGTTGGGTACTCAAGCAAATGCCCTGCCCTGTATTGAAAGAAAGGACATGGTTGACCTGGGTATATGTGACGCAGTTGTTGCA GAAACTGATATAGATTCTGATGGGATAGTTGAAGCTTGTTCTGTTTCTTCCAGGTCTAACTCAGATGGTCCCAGTCATGGAATGGAAGTTCCAGTCTCAA GGCCAGCCACTGACTGTGTTATGCTAGTGAAGCCCAAGCAACTTGATTTTGATGATGTGGAAGACTGCGGTTGGAATGAAATTGGTGATCCTGCATCAGA GAACAAACAACAGTCTCTATCATCAGAGAGACGGGCTTCTACCTTGTTGCATTCAACAGTTAAATTGGATAAAGTATCTGTTAACTCCCAAGAAAGGCCC ATCTTGTCCGTTGAGATGCCATTGCTTGAGGACCAGGCAGTTTTTAGTAAAGAAGATAAACCTTCGAATGATTCATCTGAAGCTTTTGTTAATGAGACTG CTCTTTTTGTTGATGAAAATACCAACTCTGTGCATAAGAAAATTAATTCAGCCATTTCTGAAAACCAAAATGGAGATTGCTACGTCATGGGTTCATGGCC TCAGCATAAGAGGAGAAAGATAGCGGGTCAACTGACTAGTTCCTTTTATGCTTCCTCATGTTTGATGAGAAAGCCGTTTCAGCCTATTGTTACGGATCAT GTAAATGGAAATATTAATACTATGGAAGATTCAGATACTGTCCAAATATCAAAAGGGTTTTATATGTCTCATATGGGGGATGACATGCAACCAAATGCTA TCAAGAGCTCAGTTGAAGATATTCATCAGAACTCAGGGCTCCATATGGCATGGCCTGAATTCTCATCACCAAAGCTGCAAGTTGAAAAGGTTGAACCTGG CTTGGAAGGAAGGAGCGGAAGTGCAAATAAATGTGGAGCACGCTCACCATCAGGTTTGACAAAATTATCCACTGGAGTTTCTCAAGCTAGTTCATTGGAA AAAGTTCCAGTGGAAAACCCTACTATTGTGATCATCGATGAAACAAGGCAGCACACTGCAGAAAAGAACCAGGTTTCACTGCAACTTGAAGATAGATTTG AACTGGGAAGTTCTGAACTTTTGACTTGTACTGAAACAGCCATGCAGGAAAATAGATTTCATGTAGGAAGGAATGGGAAATCACTGTCTAATTCAGTTAG TTCTCCACATAGTCAATCAATGGATTTGATTGGTACCGATCAAAGTATGCCTGTATATGAGTGGTTTGGTATGGAAACTGAGGGAATTGACTTTGAGAAA TTGGATCTTTCAGATAATGCACTAGAAAGTGCAATTGCTGTGGAGCGGCTTTGCAAATCTGTTTGCCTTGAAACACCTTTGTCCCATTTTGCTACTGCAT ATAACAAACATAAAACACTAAATTTATATCAATCTGTCCCAAATGGAGTTTTAGAAGCGATGGAGCTGAGCACCACCGTTAACACAAACAGTAACACTGG CAAGGAGCTTGAGGCCAGTTTGAAGTGTTTCAATGACAAAGTCAACGACACCTTGCATGGGAGGCTGCATTCTGACTCCCCAGCTTTTTCTAATGCTCCA TCCACGTGGGAAATCAGAAAACCTTTAATGTCTCCAGTTGGGAAGCTCTGGGAAGGAATCACATCGAGGTCTGGTAGTTCAGAGAAGAGAGTGAGCTCAA TTCCAGATCTTCCCTGCATCAGTGAAGAAAATGAGAACATCATTGAGGTACCTGAAACATTTAAGGATGTTGTTGGTTCAGAACAGATGATCAGCTCAGT CAAAAGAGGGTTGCTTGCTGATATTACAAATAATCCTGATCCTCCAATATCAGTTTATGATTCTGAAATAGTCAGTGATAGATACAGTCTTGCTTCTGAG AACACAGAGTGTAGCTACACTGGCACTTGTAGAAGGGACAAATTGAACCAAGGAAACCAGAAGGGCAACAGAAGAAAATATAACATTAAGGCAAAGGAGA ATCAGAACCTAGTGGGTGTAAATGGTGTCAAAAGAGCCAGCGAATCTCACCATAACAGATTGAGTAAGCCAATCTTATCTGGAAAAACCAGTTTGAGAAA AGGAGGTCTGAGTCTTGCGGAGACCAAGTCTAACCTTAACAATATTGTGTCAAACATTACTTCTTTTATTCCACTTGTGCAACAAAAACAAGCAGCCGCA GTTGTTACAGGGAAAAGAGATGTTAAAGTGAAGGCCCTGGAGGCTGCTGAGGTTGCAAAGCGTCTTGCAGAAAAGAAAGAAAATGAAAGAAAGATGAGGA AGGAAGCCTTGAAACTTGAGCGAGCAAAGATGGAGGAACAAAACTTGAGGCAGTGGGAGCTAGAGAAGGAAAAGAAAGACCAAGAACATAAGAGAAAAGA GGCAGATATGGCAGCAAAGAAAAGACAGAGGGAAGAAGAAGAAAAAAAGGAGAGGGAAAGGAAAAGAAAGCGTGTTGAGGAAGCAAGGAGGCAGCAGCTA GTGCATGAGGAAAAGTTACGTGCTGAGAAAGAAGAGAGAGAAAAAAAACACCGAGCTGCAGATGAAAGAGCATTCGAGAACAAGAAATCTAAGGACAAAT CAGGAAAGCATGTTAAGATGGAAAAAGAAAAGGGAGACAACAATCTTCAGAAGGTGCCTGAGAGTAAACCTGTGACTTCTATGGTTTCAACAATTGATGA TGGAAAATCAGAGTTGGGTGATTGTGGCGATAATTCAAAAGAAATGACTGTCTTTTCCAAGCCAGCTGAGAATGGCAACTTAATGTCTAACATAAGCCAA GAACAGGCATATGAGATTTCTCCATACAAAGGTTCGGATGATGAAGATGAAGATGAAGAGGATGATGAGACAGAGAATAATAAATTTATTCCGTCATGGG CCAGTAAAAATCATTTAGCTTTGATTGCTTCTTCCCAGCAAAGCATAGACCCACGAACCATTTTCACCCTAGACAGCTTTCCCGATAAATCTGAAGTTCT TTTGCCCAGAAAACTTCAGCAAAAACAGCGGGCACACCAATGA
AA sequence Show only first row Show all	>Potri.001G368200.1 pacid=42793501 polypeptide=Potri.001G368200.1.p locus=Potri.001G368200 ID=Potri.001G368200.1.v4.1 annot-version=v4.1 MTTTIEKLFLQIFERKLSIFEQVKHQADLFDHRLASKCVLDGTTPPPWLLSPSLSSLPNENKEDLISGLLLPRPHPANPYSTSAYSVQPVITTNISDLPS GLHTELGLVNKRFDSGYRLSVLSQLPVTDGVQCNLNGVPELEFNDASPQDCRDARMPDIVPDHSQSLARIHRSKSRQKALELRNSVKTGKTCPRAENNVG SCTSRFRGSGVTSLQFDHVDQSESLKLVKASNKSCVGEEVKAGECMVKENSSDVYHGRSTRSRSSRLKASYVSSRLKASYVNESGNVCTSTCLAKEDEPR ESISKRQPNQVDLTELVSVVGHASSEAQMENEDNHRGNEMASIMYSVGVPRYTSSSPQPNSTRKPLDMNNSSYIDNKDSRIRESIDDPSLQPNCINEISE MAKPSCVISNDSYGRVKAKVSDNWSKEKGSGLYFGRITRSRSSSQRADFVNESLKLDGSCGNAEEEPRQLSNPVDDFRELVKPFNITDESCGVNEKMLNY QNSEERTDSYYGKITRSRNSNQQLGVDGLPILDTSSNIAKDNDGSLSQSFGRSSQPHQPLNQVREEGVDLQEVLGTQANALPCIERKDMVDLGICDAVVA ETDIDSDGIVEACSVSSRSNSDGPSHGMEVPVSRPATDCVMLVKPKQLDFDDVEDCGWNEIGDPASENKQQSLSSERRASTLLHSTVKLDKVSVNSQERP ILSVEMPLLEDQAVFSKEDKPSNDSSEAFVNETALFVDENTNSVHKKINSAISENQNGDCYVMGSWPQHKRRKIAGQLTSSFYASSCLMRKPFQPIVTDH VNGNINTMEDSDTVQISKGFYMSHMGDDMQPNAIKSSVEDIHQNSGLHMAWPEFSSPKLQVEKVEPGLEGRSGSANKCGARSPSGLTKLSTGVSQASSLE KVPVENPTIVIIDETRQHTAEKNQVSLQLEDRFELGSSELLTCTETAMQENRFHVGRNGKSLSNSVSSPHSQSMDLIGTDQSMPVYEWFGMETEGIDFEK LDLSDNALESAIAVERLCKSVCLETPLSHFATAYNKHKTLNLYQSVPNGVLEAMELSTTVNTNSNTGKELEASLKCFNDKVNDTLHGRLHSDSPAFSNAP STWEIRKPLMSPVGKLWEGITSRSGSSEKRVSSIPDLPCISEENENIIEVPETFKDVVGSEQMISSVKRGLLADITNNPDPPISVYDSEIVSDRYSLASE NTECSYTGTCRRDKLNQGNQKGNRRKYNIKAKENQNLVGVNGVKRASESHHNRLSKPILSGKTSLRKGGLSLAETKSNLNNIVSNITSFIPLVQQKQAAA VVTGKRDVKVKALEAAEVAKRLAEKKENERKMRKEALKLERAKMEEQNLRQWELEKEKKDQEHKRKEADMAAKKRQREEEEKKERERKRKRVEEARRQQL VHEEKLRAEKEEREKKHRAADERAFENKKSKDKSGKHVKMEKEKGDNNLQKVPESKPVTSMVSTIDDGKSELGDCGDNSKEMTVFSKPAENGNLMSNISQ EQAYEISPYKGSDDEDEDEEDDETENNKFIPSWASKNHLALIASSQQSIDPRTIFTLDSFPDKSEVLLPRKLQQKQRAHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	0	1
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	1.00	0.9308
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	1.41	0.9282
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Potri.007G045300 [exp]	1.73	0.9146
AT3G54630			unknown protein		Potri.001G208700 [exp]	5.00	0.8001
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	9.00	0.8279
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.008G010900 [exp]	9.59	0.8967
AT1G49870			unknown protein		Potri.001G296700 [exp]	9.74	0.8825
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	11.22	0.8085
AT3G09070			Protein of unknown function (D...		Potri.006G096600 [exp]	13.78	0.8082
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.002G033800 [exp]	21.44	0.8051	AUL1.3

Compare expression of checked genes

Potri.001G368200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.