Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55830 852 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 554 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 419 / 3e-137 Concanavalin A-like lectin protein kinase family protein (.1) AT5G42120 402 / 5e-131 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 392 / 2e-127 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 365 / 5e-117 RLK receptor lectin kinase (.1) AT4G02410 364 / 1e-116 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 356 / 5e-114 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 355 / 2e-113 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 353 / 1e-112 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G093700 [exp] 1165 / 0 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 588 / 0 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G087800 [exp] 588 / 0 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.005G189500 [exp] 417 / 6e-137 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 411 / 2e-134 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 411 / 2e-134 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 404 / 1e-131 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 403 / 2e-131 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 402 / 4e-131 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016620 [exp] 862 / 0 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019923 [exp] 582 / 0 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 555 / 0 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022520 [exp] 515 / 5e-178 AT5G55830 494 / 5e-170 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 436 / 4e-144 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 427 / 1e-140 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 394 / 4e-128 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 385 / 5e-124 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 376 / 3e-121 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 371 / 2e-119 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G368300.2 pacid=42792229 polypeptide=Potri.001G368300.2.p locus=Potri.001G368300 ID=Potri.001G368300.2.v4.1 annot-version=v4.1 ATGAGTCCAAGAAAGATACATTTTTGCATCTTCCTCTTCGTTCTCTTTAGCTTCAAAGACCCTCCTTTTGTGTTAGCAAGTACTAGGAATGTAAGCCTTG AGTTCCCTTCTTTCAATCTCCGTAATCTCACTCTCCTCGGTGACTCTTATCTCCGAAATGGTGTGATTGGCCTCACACGTGATGTCACAGTGCCTTCTTC AAGTTCAGGCACTGTAATCTACAACAACCCGATTTCATTTTTTGATCAAGAATCCAATACCACAGCTTCTTTCTCAACAAGGTTCAGTTTTTCTATCCGT AGTGCCAATGAAAACTCTTTTGGTGATGGTTTGTCCTTTTTTCTTTCACAAGATAACCAAACTCTTGGGAGCCCTGGAGGGTACTTGGGTCTTGTTAATT CTTCTCAATTGACCAAGAACAAGTTTGTGGCTATTGAGTTTGACACCAGGCTTGATGCCCATTTCAATGATCCGAATGACCACCATATTGGTTTAGATAT TGGTAGCCTCAATTCAATCAAGACTGCTGATCCAATTTTGCAAGATATTGATTTAAAGAGTGGAGATTTGATCACTGCTTGGATTGATTACAAGAATGAT TTGAGGGTCTTGAAAGTTTATATGAGTTATTCAAGTTTGAAACCAATAAATTCCTTACTAACTGTGCACATTGACCTCTCTGAGTATCTTAAAGGTGATA TGTATGTGGGGTTTTCAGGCTCAACAGAAGGAAGCACTGAGCTTCACTTGGTTACGAATTGGAGCTTTAGAATCTCAGGTTTCCTTCCTCTGAGCCCAAA TTCAGATCCTTATAATGTATCTGATAGTTCAGTGACGGTAACAACACCTGTTATTCCTATATCAAATGCTGCAAATAAACGTCACAAGAGCCTTGGTTTC GGTCTTGGGATTACTGGTCCGGCTATCTTTTGTACGTTCCTGGTGGCTTTTGGTTATATTTCTTTCAGGAAGTGGCAGAAGATTGAAAGAGTTAAGAGCC TGAAAGCAGAGCTAATGACAGGGCCAAAGGAATTCAGTTACAAAGAGCTGAAATTAGCCACAAGAGGGTTTCAGTCAAGCAGAATAATAGGTAGAGGTGC ATTTGGGAATGTCTATAAGGCCTTCTTCAAATCTTCGGGTACCATTGCTGCAGTGAAAAGATCGAAACATTCCCATGAAGGTAAAACTGAATTCCTTGCT GAATTGTCAATTATAGCCTGCCTGAGGCACAAGAATTTGATTCCACTACAAGGTTGGTGTGTTGAGAAGGGTGAAGTGCTGCTTGTATATGAATTTATGC CTTATGGGAGCCTTGATAGGATGCTATATGAAGAAGGATCTGAGCGTGAAATATTTTTAAATTGGGCACATAGGCAAAAGACAGCAGTTGGCTTGGCCTC TTCGTTAACATATTTGCATCACGAATGCGAGCAGAAAGTCATTCACAGAGATATAAAGACTAGTAACATAATGCTGGATGGAAACTTCAATGCAAGACTG GGTGATTTTGGATTGGCAAGGATAATGGAGCACGACAAGAGTCCTGTGTCAACGCTTACTGCAGGAACAATGGGGTACTTAGCTCCTGAGTATCTTCATT GTGGGAAAGCCACTGAGAAAACTGATGTTTTTAGCTACGGAGTGGTGATACTTGAACTGGCTTGTGGTAAGAGGCCCATTGAGAAAGAACCAGTTGGCCA AAAAATGGTGAATTTGGTTGACTGGGTTTGGGGATTGTATGGTGAAGGAAAGATCATTGAAGCAGCTGATAGCAGGTTGAATGGAGAGTTTGAGGAGGAA GAAATGAGGAAGCTGTTACTTGTGGGTTTGAGTTGTGCTAATCCGGATGACACGGGGAGGCCTACCATGAGGAGAGTCCTTCAAATCCTCAATGGTGAGG CTGAGCCTATTGCTGTGCCGAGGAAGAAACCAAGCCTCACGTTCTCTTGCGGCTTGGCATTCACGCTTGAGAACATTGTTTCTGATTGTGACTAG
AA sequence Show only first row Show all	>Potri.001G368300.2 pacid=42792229 polypeptide=Potri.001G368300.2.p locus=Potri.001G368300 ID=Potri.001G368300.2.v4.1 annot-version=v4.1 MSPRKIHFCIFLFVLFSFKDPPFVLASTRNVSLEFPSFNLRNLTLLGDSYLRNGVIGLTRDVTVPSSSSGTVIYNNPISFFDQESNTTASFSTRFSFSIR SANENSFGDGLSFFLSQDNQTLGSPGGYLGLVNSSQLTKNKFVAIEFDTRLDAHFNDPNDHHIGLDIGSLNSIKTADPILQDIDLKSGDLITAWIDYKND LRVLKVYMSYSSLKPINSLLTVHIDLSEYLKGDMYVGFSGSTEGSTELHLVTNWSFRISGFLPLSPNSDPYNVSDSSVTVTTPVIPISNAANKRHKSLGF GLGITGPAIFCTFLVAFGYISFRKWQKIERVKSLKAELMTGPKEFSYKELKLATRGFQSSRIIGRGAFGNVYKAFFKSSGTIAAVKRSKHSHEGKTEFLA ELSIIACLRHKNLIPLQGWCVEKGEVLLVYEFMPYGSLDRMLYEEGSEREIFLNWAHRQKTAVGLASSLTYLHHECEQKVIHRDIKTSNIMLDGNFNARL GDFGLARIMEHDKSPVSTLTAGTMGYLAPEYLHCGKATEKTDVFSYGVVILELACGKRPIEKEPVGQKMVNLVDWVWGLYGEGKIIEAADSRLNGEFEEE EMRKLLLVGLSCANPDDTGRPTMRRVLQILNGEAEPIAVPRKKPSLTFSCGLAFTLENIVSDCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55830			Concanavalin A-like lectin pro...		Potri.001G368300 [exp]	0	1
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Potri.013G119500 [exp]	6.16	0.8780
AT5G26330			Cupredoxin superfamily protein...		Potri.001G268700 [exp]	7.68	0.8273
AT1G73050			Glucose-methanol-choline (GMC)...		Potri.008G009600 [exp]	14.69	0.8547
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	17.32	0.8676
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	18.49	0.8639
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.001G332300 [exp]	18.84	0.8223
AT5G58520			Protein kinase superfamily pro...		Potri.001G280700 [exp]	20.73	0.8559
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.007G018100 [exp]	22.44	0.8621	Pt-BGAL3.1
AT5G50350			unknown protein		Potri.010G247100 [exp]	31.46	0.8492
AT3G25130			unknown protein		Potri.002G246400 [exp]	34.42	0.8618

Compare expression of checked genes

Potri.001G368300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.