Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55870 684 / 0 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G25430 207 / 3e-58 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177400 [exp] 231 / 9e-67 AT3G25430 667 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.014G018500 [exp] 228 / 9e-66 AT3G25430 662 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033691 [exp] 750 / 0 AT1G55870 713 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10031646 [exp] 662 / 0 AT1G55870 637 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10009563 [exp] 219 / 2e-62 AT3G25430 578 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10020388 [exp] 208 / 2e-58 AT3G25430 565 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10002539 [exp] 57 / 9e-10 AT3G25430 87 / 9e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF04857 [poplar] [flax] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Potri.001G368401.1 pacid=42792816 polypeptide=Potri.001G368401.1.p locus=Potri.001G368401 ID=Potri.001G368401.1.v4.1 annot-version=v4.1 ATGTTTTGTTTCTCCTCCACACCACTATCCACACTTAAACCCTTGAAAAACAAAAACCCTTGTGACCTACACAGACCAAGCAAACCAAACCAAACAATGA GAATGAGAAAGCATCAATGGCTAAGGACGGCACTCTCACGTGCGTACTACTGCACCTTCTCCTCTTCGTTCCCTCTAAAGCACGTGACCCAATCAAACTT CGAGACCGCAGTCGCTGACCTGAAAACCCACCTGAAAGCCGCCGATTTCGTGGCCATCGACTTGGAAATGACCGGAGTCACAAGCGCTCCATGGCGCGAG TCCTTGGAGTTTGACCGCTTCGATGTCAAGTACCTTAAAGTTAAAGATTCTGCCGAGAAATTTGCTGTTGTTCAGTTGGGTGTTTGCCCCTTTCGTTGGG ACCCTCTTCGTCTCTCCTTCATTGCTCACCCGCATAATTTCTTTATATTTCCGCGTCAAGAGGTTCCAATTGATTCTTCCTCGTATGAGTTCCTTTGCCA GACGACGTCCATAGATTTCTTGGCTAAATATCATTTTGATTTCAATGTCTGCATTCGCCAAGGAGTGTCTTATTTATCTAGAGGGCAAGAAGATGAAGCG TTAAGGCTCTTGAATTTGCGATATGAGAATGAGTTATCAGAACAAGCTAGAGATGTGCCATTGGTCAGCATTACGGATATCCTGTTCAGTGAAAGAATGA AGAATAGGTTGAGAGAATGGCGTGATGGGTTGTTGAAAGATACTAGCGGGGGGTCTCAGTTGGAAGGGTCATTTTTAAATGACTCGAATCAACAATTTCA GAACATTTTTTACAAGATGCGTCCAGCTCTTTCTCTGAATGGGTTCACTTCCCATCAGCTTAGGTTGATTCAATCGGTCACAAAGAAGCATTTTAAAGAT CTTGCTTCTGTTCGTGTTGAAGGTGAAAGTTCTTGTTCCCAGCAGCTAGTTGTGTATACGGACTCAGAGAGTGATAGGGACTTGCTTAAGAAAGAAGTAA TGGATGACTATCGTAGACAAGCAGAGATGAAGATCAAAGCTGCAATTGGGTTTCGACATGTTATTGACCTCCTTTCCTCTGAAAAGAAGTTGATTGTCGG TCACAATTGCTTCTTGGATTTAGCACATATACACAGCAAATTCTTGGGTCCTCTTCCGTTGGAAGCTGAAGAATTTGTCTACTCTGTTAACAAATGTTTT CCATACATCATTGACACTAAAATACTCTTGAATACTAACAATATACTCAAGCAAAGGATGAAGAAATCAAAGACATCACTCTCCTCGGCCTTTTTATCAC TTTGTCCACAAATTGCTTTTGCTTCGAAGGAAAGTTGTAATCTGACTTTTAGCTCATCTGTTAAAGTGGAGGTTCAAGTGGATGATATAAGGTCTTCCAG CTGGATTTCTGGAGTCAAACATGAAGCTGGATATGATGCATTCATGACTGGGTGTGTCTTTGCCCAGGCTTGCAATCTTCTAGGCATTGATTTTAAACTT TATTCGCCATCTGAGAATTTGGCTTGTAATGAGAGGCTCCAGAAGCATGCTAACCTTCTATATCTCAGTTGGATTAATGGAGACATTATTGATTTAAGCA CCGGACATAGAACTGCAGAGTCTTTGAGATGCAGAGACCTAAAGAAGTCGCAGACAGGGATTCTGTTTGAGAACATTGTTTTAATCTGGGGATTTCCATC TAAACTCAAGACAGCTGTGATAAAAGATCGCATCTCCAAAGTATTTGGCCCAACATCTGTTACATCAATATGTCGTCTGGATGAAACTGCAGTTTTCGTG CAATTCAGTAAATTAAAATTGGTCGCTGATTTTCTAGTTGTGAAAGAAACCCTGGAGAGAAGTAATGATGCATTCTCTGTTTTGCATCCTCTGTCAACAA TATTGGAGGAGGAAATACTTGTGCTGCTAGTTATGAAACTTATAAAGATATCTGCAGTTCACCTACATCGAAACTTCTCTTTGCAGATCAGGCAGAGGCA GTTGGTATCAGATGGAAGACCAAGTTGGTAG
AA sequence Show only first row Show all	>Potri.001G368401.1 pacid=42792816 polypeptide=Potri.001G368401.1.p locus=Potri.001G368401 ID=Potri.001G368401.1.v4.1 annot-version=v4.1 MFCFSSTPLSTLKPLKNKNPCDLHRPSKPNQTMRMRKHQWLRTALSRAYYCTFSSSFPLKHVTQSNFETAVADLKTHLKAADFVAIDLEMTGVTSAPWRE SLEFDRFDVKYLKVKDSAEKFAVVQLGVCPFRWDPLRLSFIAHPHNFFIFPRQEVPIDSSSYEFLCQTTSIDFLAKYHFDFNVCIRQGVSYLSRGQEDEA LRLLNLRYENELSEQARDVPLVSITDILFSERMKNRLREWRDGLLKDTSGGSQLEGSFLNDSNQQFQNIFYKMRPALSLNGFTSHQLRLIQSVTKKHFKD LASVRVEGESSCSQQLVVYTDSESDRDLLKKEVMDDYRRQAEMKIKAAIGFRHVIDLLSSEKKLIVGHNCFLDLAHIHSKFLGPLPLEAEEFVYSVNKCF PYIIDTKILLNTNNILKQRMKKSKTSLSSAFLSLCPQIAFASKESCNLTFSSSVKVEVQVDDIRSSSWISGVKHEAGYDAFMTGCVFAQACNLLGIDFKL YSPSENLACNERLQKHANLLYLSWINGDIIDLSTGHRTAESLRCRDLKKSQTGILFENIVLIWGFPSKLKTAVIKDRISKVFGPTSVTSICRLDETAVFV QFSKLKLVADFLVVKETLERSNDAFSVLHPLSTILEEEILVLLVMKLIKISAVHLHRNFSLQIRQRQLVSDGRPSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55870		ATPARN, AHG2	ARABIDOPSIS THALIANA POLY\(A\)...		Potri.001G368401 [exp]	0	1
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	2.82	0.8908
AT1G03280			Transcription factor TFIIE, al...		Potri.010G102000 [exp]	3.00	0.8852
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.001G173500 [exp]	5.65	0.8690
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	12.96	0.8405	Pt-IMP4.2
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.005G222900 [exp]	17.02	0.8643
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	17.74	0.8369
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	17.74	0.8292
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.018G018900 [exp]	18.97	0.8249
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	21.07	0.8587
					Potri.014G049100 [exp]	23.45	0.8368

Compare expression of checked genes

Potri.001G368401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.