Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13180 771 / 0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT4G26600 98 / 2e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 97 / 5e-21 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G26180 72 / 5e-13 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G40000 64 / 2e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G22400 59 / 6e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G06560 55 / 9e-08 NOL1/NOP2/sun family protein (.1) AT5G66180 49 / 8e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369600 [exp] 107 / 2e-24 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G224000 [exp] 80 / 1e-15 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G096100 [exp] 60 / 4e-09 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G204900 [exp] 50 / 4e-06 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016622 [exp] 783 / 0 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10022523 [exp] 338 / 3e-113 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10023095 [exp] 97 / 8e-21 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032368 [exp] 95 / 2e-20 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025004 [exp] 83 / 2e-16 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026452 [exp] 76 / 4e-14 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020217 [exp] 63 / 4e-10 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007337 [exp] 49 / 9e-06 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10026840 [exp] 47 / 6e-05 AT4G40000 954 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0633 [poplar] [flax] NusB PF01029 [poplar] [flax] NusB NusB family CL0063 [poplar] [flax] NADP_Rossmann PF01189 [poplar] [flax] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Potri.001G368500.1 pacid=42787929 polypeptide=Potri.001G368500.1.p locus=Potri.001G368500 ID=Potri.001G368500.1.v4.1 annot-version=v4.1 ATGGCACAAGTGCTTTCCCTCCATGTTTTTTTCTCTGCAGAAATACACAAGGTTGGTCCTTCTAAGCCACTGAAGAGGATTCACAAGCCCAAAACATCTC TTAGCACCCGTAGAAAAGCAACCCAGAGTCCTCAGAGTCCCTTGCGCAAAACCCAGAAGTTGAATTTACAGGTTTCGCCTCATCGAGCTGTTTCTGCAGT GAGGTTGATGAGAATAGAGATGGGTGGTGCATTTGCTGATCTTTTGAATGATAAAGGGAAAGGGTCTGGTGATAATGAAATGGGATACGTTGAAAGAACT CTTGGGTTCCGAACCAAGGACCTGGATGATCGTGATCTTAGATTGGTTACGGACATTGTTGGAGGCACCATTCGCTGGAGAAGATATCTTGATTATCTAA TCGGATCATTGTGCCATGATGAGAAAGCATTCAGGAGCATGGAACCTCTTCTCTTGCAGATTCTCCGGATTGGCTTTTATGAGATTGTGAAGCTAGACAT GCCATCATATGCTGTTGTTGATGAGAATGTGAGGCTTGCAAAAGTTTCCCTCAGGCCCGGTGCTGGCAACATGGTCAATGGGATTCTCCGGAAGCTAGTG CTGCTTAAGGAAAGTAACTCACTCCCCCTTCCTAAATTGGAAGGTGATGATCGCGCCCAAGCACGCGCCCTTGCCACCCTTTATTCTCATCCTGTGTGGA TGGTAAGGCGTTGGACGAAGCTTTTAGGGCAAGAAAAAGCAATTAAGCTGATGATGTGGAACAACGATAACCCCAGTTTCAGCTTGAGGGCAAACAGCGG GAAAGGAGTTACAAGAGCTGACCTTGTGATGCAGTTCAATATGTTGAAGGTTCCTCACGAGCTTTCTTTGCACTTGGACCATTTTGTCCGTGTTAAAACT GGACTGCAGATTGTCATTCAAGCTGGATTGCTGAAACAAGGTCTATGTGCAGTTCAGGATGAGAGTGCAGGTTTGATAGTTTCTGTAGTTAATCCTCAAC CTGGCGATAGCATCATTGATTGTTGTGCTGCTCCAGGAGGAAAGACGCTTTATATGGCATCACAAATGCATGGCCAAGGCATGTTATATGCAATTGACAT AAACAAAGGCCGGTTGAGAATTGTTAAAGAGACAGCCAAGTTGCACCAAGTCGATGGTGTCATTACCACCATCCCTTCTGATCTTCGCACCTTCGCTGAA AGTTATCAGTTGAAGTCTGATAAGGTTTTGCTGGATGCTCCATGTTCTGGGCTTGGTGTTCTGTCCAAGAGAGCGGACTTGCGATGGAATAGGAGGTTGG AGGATTTGGAAGAACTTAAGAAATTGCAGGAGGAGCTTCTTGATGCGGCTTCCATATTGGTAAAGCCTGGTGGAGTTTTAGTATACAGTACTTGTTCCAT AGATCCTGAAGAGAATGAAGAGAGGGTGGATGCATTTCTTCTCAGGCATCCTGAATTTCGTATAGATCCTGTTGACAGATATGTGCCACCTGATTTTGTA ACAAAACGTGGTTTCTATTCCTCTGATCCTGTAAAACATTCAATGGACGGTGCCTTTGCAGCTCGCCTAATTCGGACCTTGTGA
AA sequence Show only first row Show all	>Potri.001G368500.1 pacid=42787929 polypeptide=Potri.001G368500.1.p locus=Potri.001G368500 ID=Potri.001G368500.1.v4.1 annot-version=v4.1 MAQVLSLHVFFSAEIHKVGPSKPLKRIHKPKTSLSTRRKATQSPQSPLRKTQKLNLQVSPHRAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVERT LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVKLDMPSYAVVDENVRLAKVSLRPGAGNMVNGILRKLV LLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKLLGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQFNMLKVPHELSLHLDHFVRVKT GLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMHGQGMLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAE SYQLKSDKVLLDAPCSGLGVLSKRADLRWNRRLEDLEELKKLQEELLDAASILVKPGGVLVYSTCSIDPEENEERVDAFLLRHPEFRIDPVDRYVPPDFV TKRGFYSSDPVKHSMDGAFAARLIRTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13180			NOL1/NOP2/sun family protein /...		Potri.001G368500 [exp]	0	1
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.001G036000 [exp]	10.48	0.7567
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Potri.013G065700 [exp]	11.40	0.7840
AT2G30500			Kinase interacting (KIP1-like)...		Potri.013G158100 [exp]	11.83	0.6809
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Potri.018G103700 [exp]	12.72	0.7784
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.001G351800 [exp]	23.32	0.7802
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Potri.014G049200 [exp]	24.37	0.7416
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Potri.006G049900 [exp]	31.46	0.7153
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.003G137100 [exp]	33.76	0.7170
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	37.94	0.7142
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	40.39	0.7046	UBP25.1

Compare expression of checked genes

Potri.001G368500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.