Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55840 1273 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 342 / 1e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 324 / 2e-96 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 312 / 2e-89 PGR3 proton gradient regulation 3 (.1) AT5G01110 303 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 300 / 8e-88 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G12100 288 / 8e-83 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G65560 290 / 1e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 287 / 1e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02150 286 / 1e-82 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 381 / 1e-114 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 362 / 5e-107 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G236800 [exp] 356 / 2e-106 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 356 / 9e-106 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G040200 [exp] 353 / 2e-105 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 317 / 5e-94 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 315 / 3e-93 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G250700 [exp] 315 / 2e-92 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G249800 [exp] 304 / 2e-88 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037968 [exp] 1344 / 0 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038697 [exp] 640 / 0 AT5G55840 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 360 / 4e-106 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 350 / 3e-105 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 342 / 2e-101 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 327 / 1e-95 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 322 / 5e-94 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 314 / 1e-92 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 313 / 1e-92 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 319 / 3e-92 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G368700.2 pacid=42789499 polypeptide=Potri.001G368700.2.p locus=Potri.001G368700 ID=Potri.001G368700.2.v4.1 annot-version=v4.1 ATGATGCCCTGTTTTATATCTTCTTCAACGGCCAAAACAATCTCTAAAATCCCACTTCAGTTATCAAGATTTAGACCCTTTTCCCACATACCCTTCTCTG ATTATACCAAACAAAGTTTCACATATGATCACAAAAACTCTGCTTTCACCCACCAACAATCCCCAGCAGAAATGGAAAAGAGCATATACATAATGCTGAC TCTAGACCGCTGGGACTCACTAAACCACATGGAATACAGGTTAGCTTCACTGAGGCCAGTCCATGGGAGGCTAACTTTGAAATTTCTCAACTGGGTCATT AAGCAACCTGGTTTGGAACTCAATCACCTTACTCATATACTCTCCATCTCTACTCATATACTTGTGAGAGCTAGAATGTATGAAGCTGCTAAGTCAATTT TAAGGCATCTTTCTAAATTGGGTGTTGGTTCAAAATCTGTTTTTGATGCTTTAATGAACACTTACCCACTTTGCAAGTCCAACCCTTCAGTTTTTGACCT TTTGATTAGGGTTTATTTGAGAGAAGGAATGGTTATTGATGCTTTAGAGACTTTTTATTTGATGGGTTCTAGAAGGTTTAACCCTTCTGTTTATACATGT AATATGCTGCTTAGTTCAGTGGTAAAGGAACGGAGGGTTGGGTCGGTTTGGTCTTTTTTTATGGAAATGCTAGCTAGGAGGATTTGTCCAAATGTTGCTA CTTTTAATATATTGATTAATGTTTTGTGTGTCGAAGGGAAGCTTAAGGAAGCTGGTTATCTTTTAAGAAAGATGGAAGGGAGTGGTTATGTTCCAACTAT AGTTACTTATAATACTATTCTTAATTGGTGTTGCAAGAAGGGGCGATATAAAGCAGCCTCTGATTTGATTGATAGAATGGAATCTAAGGGTATTGAAGCA GATGTCTGCACATATAATATGCTCATTGATGATTTGTGTAAAAACAACAGAAGTGCAAAAGGGTATTTACTGTTGAAAAAGATGAGAAAGAGGATGATAG CTCCTAATGAATTCACTTATAATACTCTAATTAATGGACTTATGAAAGAAGGAAAGATTGGAGGTGCTACTCGAGTTTTTAATGAGATGTTGATGCTTAA CCTTTCACCAAACCGTGTTACTTACAATATTTTGATTGATGGGCATTGTGATTGTGGTAATTTTGAACAAGCTTTGAGGCTTTTGGATGTGATGGAAGCA AAGGGACTAAGGCCTGATGAAGTTAATTATGGGGCTCTTTTAAGTGGGTTGTCCAAGCTTGCGAAATTTGACATAGCCAAAAGCCTTATGGAGAGAATAA GAATGAGTGGGATGGTTGTTGGCTACAGAGCATACACAGCCATGATTGATGGGTTATGCAAACATGGATTGCTTGATGAGTCTTTGCAATTGCTTGATAT GATGTTCAAGGATGGTGCAAGTCCAGATATTATTACATTTTCTGTGCTCATAAATGGATTTTGCAAAGCAGGAAAAATTAAAAATGCAAAGGAAGTGATA TGTAAAATGTTTAAAGCTGGACTTGCACCAAACTATGTCATATACGCTACTTTAATTTACAATTCCTGCAAGAAGGGTGATATCACAGAAGCATTCAGGA ACTATGCAACAATGACTCGCACTGGCCATGATGTGGACTATTTCATCTGTAATGTGCTGATTTCTTCTCTTTGTAGAGCTGGAAGGGTAGCAGAGGCAGA GGATTTTATGCGTCATATGAGCACAATTGATCTTGCCCCTAACTCCATTACTTTTGATTGTATTATAAATGGATATGGAATTTTGGGTGATGCCCTGAAA GCATTCTCAATGTTTGATGAGATGATTAAATTAGGTCATTGCCCTAGTCATTTCACATATGGTAGTCTGCTTAAAGGGCTATGCAAGGGTGGAAATTTGA GGGAGGCAAAGAAATTACTGTATAAACTTCACCATATTCCTGCTGCTGTTGACACTAATATCTACAATACAATTCTCACTGAGACATGTAAACGGGGGAA GTTGTCAGATGCAGTGGCCCTTTTTGGTGAAATGGTCCAGTTTAATGTGCTGCCTGATAGTCACACATATGCTATCATTCTTGCTGGGTTAAGTAGGAAA GGCAAAATGGTGCCTGCTCTTCTTTTCTTTGAAAAAGCACTGGCAAGAGGAACTCTGTCCCCAAATAAGGTCATGTACACTAGCTTGTTTGATGGTTTGT TCAAGGTTGGTCAATCAAATGCTGCTTCATATATTTATGAAGAGATGGAGCACAAAGGCATAAACCCAGATACTATTGCAATTAATGCAGTACTAGATGG ATACTCAAGGATGGGGAAAATGGAAAAGGTTGAAAAGCTCTTCATAAAGATGCAGAGTGGTAGTCTGACCCCTAGCTTGGCTACATATAATATTCTCTTG CATGGGTATTCAAAGAAAAAGGATTTGTTGAAATGCTCTAAATTCTACAATATCATGACAAGGATGGGTATTTCACCTGATAAACTAACTTGCCATTCTA TCATTCTTGGGCTTTGCAAGTCTGGTATGCTGGACGTTGGTTTTAAAATGTTAAAGAAGATGATCATGGAAGATACTTTAGTTGATCAACTTACACTTAA CATGCTCATCACGAATTCATGTGAAACTGATAAAATGGGAAAGGCATTTGATCTGTTGAATATTAAGAATTTACTTGGAATTATTCCTGATGTAAATACT TACAATGCCATCTTTACTGGACTCAACAGAGCCTCTGCTCTCCGAGAATCTCATCTTCTTTTGCATGACATGTTGGAGAGGGGTATTACTCCTACAAGCA CACAGTATATTTCATTAATTAATGGTATGTGTAGAATGGGGGATATACAAGGAGCATTCAGGCTAAAAGATGAAATGGAAGCAATTGGTGTCAGTTCCTG GGATGTTGCTGAGAGTGCTATGGTAAGAGGGCTTGCCCAGTGTGGGAAGGTTGAAGAAGCCATGCTGGTTCTTGATTGCATGCTTCAGAAGCGGCTCATT CCAACCGTCGCTACTTTTACAACTCTAATGCACATGCTCTGCAAGAAAGCTAAACTGTCTGAGGCTTTAAAGTTGAGGGGTAAAATGGCGCTTTATGGGG TGAAACTCGATGTTGTTGCATACAATGTTCTCATATCAGGCCTTTGTGCTGATGGTGATGCTTTGGCTGCATTTAATCTGTATGAAGAGATGAAAGAAAG GGGCCTTTGGCCCAACACCACAACCTATTGCACTCTCATTGATGCTATTTCCACCAATGAGGTTAGTCTCGTAAAGAGTGGAATTCTTTTGAAGGATTTG CAGGAGAGGGGAATGATATCTTGGAATTTTAATGGAAGCACAGATGAGGGTTTGATAACTGCCATGAAGAATTTGAAGTCCTTGAGGCACAACAGAAGGA AATGA
AA sequence Show only first row Show all	>Potri.001G368700.2 pacid=42789499 polypeptide=Potri.001G368700.2.p locus=Potri.001G368700 ID=Potri.001G368700.2.v4.1 annot-version=v4.1 MMPCFISSSTAKTISKIPLQLSRFRPFSHIPFSDYTKQSFTYDHKNSAFTHQQSPAEMEKSIYIMLTLDRWDSLNHMEYRLASLRPVHGRLTLKFLNWVI KQPGLELNHLTHILSISTHILVRARMYEAAKSILRHLSKLGVGSKSVFDALMNTYPLCKSNPSVFDLLIRVYLREGMVIDALETFYLMGSRRFNPSVYTC NMLLSSVVKERRVGSVWSFFMEMLARRICPNVATFNILINVLCVEGKLKEAGYLLRKMEGSGYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEA DVCTYNMLIDDLCKNNRSAKGYLLLKKMRKRMIAPNEFTYNTLINGLMKEGKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCGNFEQALRLLDVMEA KGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVI CKMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALK AFSMFDEMIKLGHCPSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTILTETCKRGKLSDAVALFGEMVQFNVLPDSHTYAIILAGLSRK GKMVPALLFFEKALARGTLSPNKVMYTSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLATYNILL HGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLDVGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNT YNAIFTGLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLI PTVATFTTLMHMLCKKAKLSEALKLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNLYEEMKERGLWPNTTTYCTLIDAISTNEVSLVKSGILLKDL QERGMISWNFNGSTDEGLITAMKNLKSLRHNRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	0	1
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	2.00	0.8838
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	2.23	0.8644	FCA.3
AT3G22430			unknown protein		Potri.008G024500 [exp]	3.74	0.8480
					Potri.012G066900 [exp]	4.00	0.8683
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	4.24	0.8829
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	6.92	0.8510
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	7.74	0.8613
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	8.12	0.8380
AT3G09060			Pentatricopeptide repeat (PPR)...		Potri.016G111600 [exp]	8.30	0.8366
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	8.83	0.8488

Compare expression of checked genes

Potri.001G368700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.