Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCSLE1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55850 887 / 0 ATCSLE1 cellulose synthase like E1 (.1) AT4G24010 491 / 8e-164 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT4G23990 490 / 1e-163 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24000 486 / 3e-162 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT2G32540 369 / 1e-116 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32530 367 / 3e-116 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT4G15290 363 / 2e-114 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT5G17420 358 / 4e-110 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G32620 351 / 7e-110 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT2G32610 347 / 2e-108 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004300 [exp] 974 / 0 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.003G142400 [exp] 525 / 3e-177 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.006G004166 [exp] 496 / 2e-171 AT1G55850 429 / 1e-145 cellulose synthase like E1 (.1) Potri.003G142500 [exp] 508 / 2e-170 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.010G074700 [exp] 466 / 2e-154 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.010G074800 [exp] 464 / 2e-153 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.002G227300 [exp] 416 / 9e-135 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 405 / 5e-131 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.018G103900 [exp] 384 / 8e-120 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016625 [exp] 943 / 0 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10003196 [exp] 484 / 4e-161 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 481 / 5e-160 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10032415 [exp] 478 / 4e-159 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 454 / 3e-149 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10002134 [exp] 323 / 5e-97 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10007538 [exp] 288 / 5e-84 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 288 / 5e-84 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10029245 [exp] 284 / 7e-83 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10007296 [exp] 283 / 7e-83 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.001G369100.1 pacid=42790804 polypeptide=Potri.001G369100.1.p locus=Potri.001G369100 ID=Potri.001G369100.1.v4.1 annot-version=v4.1 ATGAGAAGTGAGAAGTATCTTCCTCTGTTCGAGACAAAGAGAGCTAGGGGTCTGGTCTTATTTAGGTCCTTTGCAGTGACTTTGTTTGTGGGCATATGTT TGATATTGTTTTACAGAGTAAGCAACATACCGAGAGATGGAGAAGAAGGGAGATGGGTTTGGATTGGGTTGCTTGGAGCTGAGCTCTGGTTCGGTTTTTA CTGGATCCTCACACAAGCTCTCAGGTGGAACCAGGTTTACAGGCTCACCTTCAAGGACAGGCTCTCTCTAAGATATGAGAAAGACTTGCCTCGGGTGGAC GTATTTGTGTGCACGGCAGACCCCGTGATAGAGCCACCGATAATGGTGATGAACACTGTTTTATCGGTCATGGCTTATGATTACCCACCGGAGAAGCTTG CCATTTACCTGTCGGATGATGCCGGATCGGATCTAACTTTCTATGCTCTCTTGGAGGCATCTAGATTTGCAAAACAATGGCTACCATATTGCAAGAAGTT CAACGTGCAACCAAGGTCACCAGCTGCTTATTTTGTATCCGAGTCTCCTACAGGAGACGGTGGCGGTCAGAGTCAGACTATGGACTTTATGGCAATCAAG AATTTGTACCAAGAAATGGCGGATCGAATTGAAACAGCAACCATGTTAGGAAGAATCCCTGAAGAAGCACGCCTGGAACATGAGGGATTTTCTCAGTGGG ATTCTTACTCATCGAAAAGAGATCATGACACCATTCTAAAAATTTTGATTGACGGGAAAGATCCATGTTCCACGGATACTGATGGGAGTGCATTGCCTAC TTTAGTATACTTGGCTAGAGAAAAGAGACCCCAACATTTCCACAATTTCAAAGCTGGGGCTATGAATGCTTTGATAAGAGTGTCATCAAAGATTAGCAAT GGACAGATCGTTCTCAGTCTAGACTGTGATATGTACTCAAACGATCCACTAACTGTGCGGGATGCACTTTGCTTCTTCATGGATGAAGAAAAGAGCCATG ACATTGCTTTTGTGCAGTTCCCACAGTGGTTCGCAAACGTTACTAAGAATGACCTATACAGCAGTTCCTTGCGTGTAATCACCAATGTGGAATTCCATGG TACGGATGGTTATGGAGGCCCTCTTTATGTTGGAACTGGCTGCTTTCACAGGAGAGATACTCTCTGTGGAAGGGAATTCAGTCAGGATTCTAAGATTGAA TGGAAAAAACATAACGATCATAGAAGACAACAAAGTGTTCACGAATTAGTAGAAGAAACAAAAACTCTTGCAAGCTGCACTTATGAGCAAAATACAAAAT GGGGGAATGAGACGGGGTTGAAATATGGATGTCCAGTGGAAGACGTGATTACAGGGTTGTCTATCCAATGCAAAGGATGGAAATCAGCATATTTCAATCC AGAAAGGAAAGCATTCTTAGGTCTTGCACCAACCACCTTACCTCAGGTACTTGTGCAACACAAACGATGGTCTGAAGGTGATTTTCAGATTTTGCTCTCC AAGTACAGCCCTGCATGGTATGCACATGGCAGGATCAGACTTGGCCTTCAACTGGGGTATTGCTGCTACTGTTTCTGGGCTTCTAACTGCTTCGCAACTC TGTACTACTCCATCGTTCCCTCGCTTTTTCTCCTGAAAGGCATATCCTTGTTTCCCCAGGTTTCAAGCCCATGGTTCCTACCATTTGCATATGTGATAGT TGCCAAATACATTTACAGCCTAGTTGAGTTTCTCTGGGCTGACGGGACAGTCCTAGGTTGGTGGAACGACCAAAGAATTTGGCTATATAAAAGAACAAGC TCCTATCTCTTCGCCACTATCGACACCATTTTAAAGACACTAGGATTTGGTGAAACAGCATTTGTAATCACAGACAAAGTAGCAGATGAAGACGTCTCGC AAAGATACGAGAAAGAGATGATGGAGTTTGGAGCCACCTCTCCAATGTTCGAAATCTTATCCACGCTTGCGATGCTCAATTTATTTTGCCTTGCCGGAAC AGTGAAAAAGGTGATCATGAATGACAGCATTGATAGACTTCATGAGACAATGCCTTTGCAAATTCTACTTTGTGGGGTTTTGGTCATCGTCAACTTGCCT CTGTATCAAGGCCTTCTTCTAAGGAAGGACAAGGGCCGGATGCCATGCTCTGTTGCAGTTAAATCTTCTTTAGCAGCTCTCCTTGTTTGTACCACTTTTT CTTTCCTATAA
AA sequence Show only first row Show all	>Potri.001G369100.1 pacid=42790804 polypeptide=Potri.001G369100.1.p locus=Potri.001G369100 ID=Potri.001G369100.1.v4.1 annot-version=v4.1 MRSEKYLPLFETKRARGLVLFRSFAVTLFVGICLILFYRVSNIPRDGEEGRWVWIGLLGAELWFGFYWILTQALRWNQVYRLTFKDRLSLRYEKDLPRVD VFVCTADPVIEPPIMVMNTVLSVMAYDYPPEKLAIYLSDDAGSDLTFYALLEASRFAKQWLPYCKKFNVQPRSPAAYFVSESPTGDGGGQSQTMDFMAIK NLYQEMADRIETATMLGRIPEEARLEHEGFSQWDSYSSKRDHDTILKILIDGKDPCSTDTDGSALPTLVYLAREKRPQHFHNFKAGAMNALIRVSSKISN GQIVLSLDCDMYSNDPLTVRDALCFFMDEEKSHDIAFVQFPQWFANVTKNDLYSSSLRVITNVEFHGTDGYGGPLYVGTGCFHRRDTLCGREFSQDSKIE WKKHNDHRRQQSVHELVEETKTLASCTYEQNTKWGNETGLKYGCPVEDVITGLSIQCKGWKSAYFNPERKAFLGLAPTTLPQVLVQHKRWSEGDFQILLS KYSPAWYAHGRIRLGLQLGYCCYCFWASNCFATLYYSIVPSLFLLKGISLFPQVSSPWFLPFAYVIVAKYIYSLVEFLWADGTVLGWWNDQRIWLYKRTS SYLFATIDTILKTLGFGETAFVITDKVADEDVSQRYEKEMMEFGATSPMFEILSTLAMLNLFCLAGTVKKVIMNDSIDRLHETMPLQILLCGVLVIVNLP LYQGLLLRKDKGRMPCSVAVKSSLAALLVCTTFSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	0	1	ATCSLE1.1
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	1.00	0.9483	DAO.3
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014000 [exp]	2.82	0.9052
AT1G74790			catalytics (.1)		Potri.015G067200 [exp]	3.46	0.8960
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G107700 [exp]	3.46	0.8726
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207300 [exp]	5.91	0.8589	ILR1.1
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.007G118800 [exp]	6.00	0.8546
AT1G71695			Peroxidase superfamily protein...		Potri.005G195700 [exp]	6.63	0.8343
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Potri.002G169400 [exp]	7.93	0.8414
AT5G28050			Cytidine/deoxycytidylate deami...		Potri.013G036000 [exp]	8.48	0.8229
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	9.16	0.8300

Compare expression of checked genes

Potri.001G369100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.