Plant FIBer expression Database

Potri.001G369300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26620 515 / 0 Sucrase/ferredoxin-like family protein (.1)
AT5G55900 414 / 5e-143 Sucrase/ferredoxin-like family protein (.1)
AT3G27570 259 / 1e-82 Sucrase/ferredoxin-like family protein (.1)
AT5G40510 256 / 4e-82 Sucrase/ferredoxin-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G344400
[exp]
293 / 1e-95 AT5G40510 358 / 2e-122 Sucrase/ferredoxin-like family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016627
[exp]
485 / 4e-170 AT4G26620 489 / 8e-172 Sucrase/ferredoxin-like family protein (.1)
Lus10022532
[exp]
473 / 7e-165 AT4G26620 469 / 1e-163 Sucrase/ferredoxin-like family protein (.1)
Lus10022274
[exp]
287 / 6e-94 AT5G40510 358 / 4e-123 Sucrase/ferredoxin-like family protein (.1)
Lus10002520
[exp]
248 / 3e-78 AT5G40510 328 / 4e-110 Sucrase/ferredoxin-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06999 Suc_Fer-like Sucrase/ferredoxin-like
Representative CDS sequence
>Potri.001G369300.1 pacid=42792647 polypeptide=Potri.001G369300.1.p locus=Potri.001G369300 ID=Potri.001G369300.1.v4.1 annot-version=v4.1
ATGGCAAGCAACAGAGACGACTCGCTTTCATACACCAACAACCTCTCATTACCTTGCTCTCCAATCACAGCTTCTGACCTTCTAGAGCCCTATTACCTCC
CCGACCCTTCAAGCTCTCTCTTTGGCAGTGCTTCCAATAGCTACCAAAACGACTCTGTTTTGCTCATTGATCCTACTACGTGCAGCGGCAGTGATGCGGA
GTTTGGGTTCTCTAGACCTGATTTCAGACAAAGCCCACTTGCTGGGACTGTACAGTTGTATCACCGCCACGTCTTCTTGTGTTACAAGAACCCTTCTGTT
TGGCCAGCTAGGATTGAGGCTGCTGAGTTTGATCGTTTGCCTAGGCTGCTCTCCGCTGCTGTCATGGCTAGGAAAGGAGATATGAAGAACGAGACCCGCT
TAACAATATGTGAGGGGCATGATGGAACTGAGACATCAAATGGAGATGTGTTAATCTTCCCAGATATGATCAGATACAGGAGATTGACACATTTTGATGT
CGACACATTTGTTGAGGAAGTGCTTGTGAAGGATGGTGAATGGTTGCCTGGAACTCCTGAAAAATTAAAGGGTTCTTATGTTTTTGTATGTTCTCATGGG
TCCCGAGATCGTCGCTGTGGTGTTTGTGGACCTGCTTTGGTTAGTAGATTCGAAGAGGAGATAGAATTACATGGTCTCCAAGGTAAAGTATCCGTCAGCC
CGTGCTCACACATTGGAGGGCATAAATATGCAGGAAATGTCATTATATTGGGATCAAGTTTCAAAGGAGCTGTCACTGGACACTGGTACGGGTATGTCAC
CCCAGATGACATACAAATATTACTCGAGCAGCATATTGGGAAGGGTGAGATTGTAGACCGGCTGTGGAGGGGCCAGATGGGTTTATCAGAAGAAGAACAG
ATTAAATCCCACGAGCTTAGGCTCCAACAGAATGGCGGGACTACAGAAAACAGTAAAGAGATTACACAAAGACCGGTAGACAAATCAAACACTAGCTCGA
GTAGGTCTGAAGTTGTTTCTACAGGCTGTTGTCAGCAAAATGGAAGTTCATCCTGTTGCCAAAACCCTGTCTTACCAGAGAAGGATGTTGTAGATGCCAA
TGAGAGGACAGCCAAGGTGACACCTGAAAAGAAGAAGAGCAACAACAAGAAACCACTATCCCGGATCAACAGCAGTAAGGGATCATCTGCACGGAAGGTT
TGTGCTATGCCAACATGGTTTGAGAGCTGGGAGCGTGATGATACATATGCAGCTCTTGCTGTTGTTTGTGCTGTAGTGTCAGTTGCCGTTGCTTACAAGT
GCTACAGACAGCTGTGA
AA sequence
>Potri.001G369300.1 pacid=42792647 polypeptide=Potri.001G369300.1.p locus=Potri.001G369300 ID=Potri.001G369300.1.v4.1 annot-version=v4.1
MASNRDDSLSYTNNLSLPCSPITASDLLEPYYLPDPSSSLFGSASNSYQNDSVLLIDPTTCSGSDAEFGFSRPDFRQSPLAGTVQLYHRHVFLCYKNPSV
WPARIEAAEFDRLPRLLSAAVMARKGDMKNETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKDGEWLPGTPEKLKGSYVFVCSHG
SRDRRCGVCGPALVSRFEEEIELHGLQGKVSVSPCSHIGGHKYAGNVIILGSSFKGAVTGHWYGYVTPDDIQILLEQHIGKGEIVDRLWRGQMGLSEEEQ
IKSHELRLQQNGGTTENSKEITQRPVDKSNTSSSRSEVVSTGCCQQNGSSSCCQNPVLPEKDVVDANERTAKVTPEKKKSNNKKPLSRINSSKGSSARKV
CAMPTWFESWERDDTYAALAVVCAVVSVAVAYKCYRQL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26620 Sucrase/ferredoxin-like family... Potri.001G369300
[exp]
0 1
AT3G59910 Ankyrin repeat family protein ... Potri.007G146500
[exp]
1.41 0.8403
AT3G43230 RING/FYVE/PHD-type zinc finger... Potri.018G064200
[exp]
4.47 0.8211
AT5G24870 RING/U-box superfamily protein... Potri.006G274700
[exp]
10.95 0.7780
AT5G64610 HAM1 histone acetyltransferase of t... Potri.005G171700
[exp]
12.48 0.8050
AT5G11380 DXPS3 1-deoxy-D-xylulose 5-phosphate... Potri.006G249700
[exp]
16.24 0.7766
AT4G02730 AtWDR5b human WDR5 \(WD40 repeat\) hom... Potri.002G051900
[exp]
19.44 0.7431 HMCA902
AT2G31130 unknown protein Potri.013G118000
[exp]
20.39 0.7908
AT4G35140 Transducin/WD40 repeat-like su... Potri.009G139000
[exp]
26.53 0.7021
AT5G61450 P-loop containing nucleoside t... Potri.003G108000
[exp]
27.54 0.7279
AT3G62770 ATATG18A autophagy 18a, Transducin/WD40... Potri.002G207865
[exp]
27.74 0.7610

Potri.001G369300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.