Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55840 466 / 3e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47730 446 / 4e-158 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G34580 90 / 1e-19 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G47510 89 / 2e-19 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G24840 88 / 6e-19 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 83 / 2e-17 ATSFH12 SEC14-like 12 (.1) AT4G39180 83 / 2e-17 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 83 / 3e-17 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 82 / 4e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 81 / 2e-16 ATSFH3 SEC14-like 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004000 [exp] 476 / 5e-170 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.016G005100 [exp] 457 / 1e-162 AT5G47730 501 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G230500 [exp] 89 / 2e-19 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G076200 [exp] 88 / 5e-19 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G158700 [exp] 87 / 6e-19 AT5G47510 421 / 2e-145 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G119700 [exp] 87 / 1e-18 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 86 / 4e-18 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.007G020300 [exp] 85 / 4e-18 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.009G119500 [exp] 83 / 3e-17 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038752 [exp] 461 / 6e-164 AT5G47730 489 / 4e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10039106 [exp] 443 / 7e-157 AT5G47730 459 / 2e-163 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10043160 [exp] 439 / 4e-152 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032587 [exp] 416 / 1e-146 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016628 [exp] 398 / 4e-139 AT1G55840 415 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10022533 [exp] 351 / 3e-122 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10028938 [exp] 93 / 8e-21 AT5G47510 422 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10007464 [exp] 92 / 1e-20 AT5G47510 421 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022790 [exp] 89 / 3e-19 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 87 / 1e-18 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G369400.1 pacid=42791273 polypeptide=Potri.001G369400.1.p locus=Potri.001G369400 ID=Potri.001G369400.1.v4.1 annot-version=v4.1 ATGGGCACCACTGCTAATCAAGATCAAGCAATCAAACAATTGCAGTCCATAATGGACCAAATAGATGAGTCAATGAAGAACACATATCAGAATATGCACC AGGGCTATCCAACAGAAACTTTGGTTCGGTTTCTCAAAGCAAGGGACTGGAATGTTGCCAAGGCTCATAAAATGTTGGTTGATTGTTTAGAATGGAGGAT ACAAAACAAGATCGATGACATGTTAGCGAAACCAATAATTCCCTCCAATTTGTATAGAGCAGTTCGAGATTCTCAACTTTTAGGATTATCAGGCTACTCT AAAGAGGGTCTTCCTATAATTACCATTGGTGCTGGGCTCAGTACATTTGATAAAGCTTCTGTACATTACTATGTGCAGTCACACATCCAAATAAATGAAT ATAGAGATCGTGTGATATTGCCAACTGCAACCAAGAAGTATGGACGACATATTAGCACCTGTCTGAAGGTTTTAGATATGACTGGCTTAAAGCTTTCAGC ATTGAATCATTTAAAGCTATTGACTACCATGTCCACAATTGATGACTTGAATTATCCAGAAAAAACGGAAACATACTATATTGTCAATGCCCCATATATA TTTTCAGCTTGTTGGAAGGTTGTGAAGCCTCTCTTACAAGAAAGGACAAGGAAGAAAATTCAGGTGCTGCAAGGTTGTGGAAGAGATGAATTGTTAAAGA TTATGGATTATTCTTCCCTGCCACATTTTTGTAGAAAAGAAGGCTCTGGTTCATCCAAGAACACTGAGGATGGAAGCAATTGTTTCTCCCCGGACCATGC ATTCCACCAACAGCTATACAGTTATATCAAACAGCAAGCTGAACTTCTGGATTCAATTTCACCAATCAAACAGGGGTCAGTCCATGTGGGTTTCCCTGAC CCAGACCCCGAAGATGCCAAGATTGCTAGAACAATAGAATCTGAGTTCCACAGGCTCAGGAATCTGAATGGGCTATCTAACTCAGTAAATGGCCTTAAAG TTGATGGTAACTAA
AA sequence Show only first row Show all	>Potri.001G369400.1 pacid=42791273 polypeptide=Potri.001G369400.1.p locus=Potri.001G369400 ID=Potri.001G369400.1.v4.1 annot-version=v4.1 MGTTANQDQAIKQLQSIMDQIDESMKNTYQNMHQGYPTETLVRFLKARDWNVAKAHKMLVDCLEWRIQNKIDDMLAKPIIPSNLYRAVRDSQLLGLSGYS KEGLPIITIGAGLSTFDKASVHYYVQSHIQINEYRDRVILPTATKKYGRHISTCLKVLDMTGLKLSALNHLKLLTTMSTIDDLNYPEKTETYYIVNAPYI FSACWKVVKPLLQERTRKKIQVLQGCGRDELLKIMDYSSLPHFCRKEGSGSSKNTEDGSNCFSPDHAFHQQLYSYIKQQAELLDSISPIKQGSVHVGFPD PDPEDAKIARTIESEFHRLRNLNGLSNSVNGLKVDGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55840			Sec14p-like phosphatidylinosit...		Potri.001G369400 [exp]	0	1
AT1G15780			unknown protein		Potri.003G025200 [exp]	2.44	0.7999
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	4.47	0.7940
AT5G19680			Leucine-rich repeat (LRR) fami...		Potri.006G163900 [exp]	11.31	0.7476
AT3G42050			vacuolar ATP synthase subunit ...		Potri.019G047800 [exp]	12.16	0.7672
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	12.84	0.7614
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.017G066300 [exp]	15.49	0.7770
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.006G108800 [exp]	15.87	0.7547	Pt-VMVSR.1
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.016G095100 [exp]	18.81	0.7604
AT4G10610		ATRBP37, RBP37,...	RNA-BINDING PROTEIN 37, CTC-in...		Potri.011G152700 [exp]	18.97	0.6710
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137900 [exp]	20.49	0.7054

Compare expression of checked genes

Potri.001G369400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.