Plant FIBer expression Database

Pt-ATRPAC42.1 (Potri.001G369500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ATRPAC42.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G60620 509 / 0 ATRPAC43 RNA polymerase I subunit 43 (.1)
AT1G60850 466 / 8e-165 AAC42, ATRPAC42 DNA-directed RNA polymerase family protein (.1.2.3)
AT2G15430 140 / 2e-38 NRPE3A, NRPD3, NRPB3, RPB35.5A, RBP36A DNA-directed RNA polymerase family protein (.1)
AT2G15400 132 / 1e-35 NRPE3B, RBP36B DNA-directed RNA polymerase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G097600
[exp]
145 / 4e-40 AT2G15430 547 / 0.0 DNA-directed RNA polymerase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018468
[exp]
534 / 0 AT1G60620 513 / 0.0 RNA polymerase I subunit 43 (.1)
Lus10011214
[exp]
522 / 0 AT1G60620 523 / 0.0 RNA polymerase I subunit 43 (.1)
Lus10002823
[exp]
138 / 1e-37 AT2G15430 541 / 0.0 DNA-directed RNA polymerase family protein (.1)
Lus10027873
[exp]
136 / 1e-36 AT2G15430 539 / 0.0 DNA-directed RNA polymerase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
CL0509 RBP11-like PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain
Representative CDS sequence
>Potri.001G369500.1 pacid=42790402 polypeptide=Potri.001G369500.1.p locus=Potri.001G369500 ID=Potri.001G369500.1.v4.1 annot-version=v4.1
ATGAGTGAACAAGAAAGCAGCAGTGATGAAAGAATGAGCAGCGAAGAAGAAGAAGAACAACAACAAAAGGAGGAGGGATTTTCATATTGGAATTTGAAAG
ATGTGGAAAGGGGTCAACTGCCACCACATATCCGAAAACAAGGAACTCGTGTTTATTGCAAACCTGATGCTCCTACTAATACTGAAACTTTGCAATATTC
TGGTTCCTATGCGTCAATGGGAGTAGATAATAGTTTACGATTAGATTCTTTCCGTGAAAACTTCAGAATTAAGGTAATTGCACTGGATAAGGATAAAATG
GAGTTTGATATGATTGGTATTGATGCAGCAGTTGCCAACGCTTTTCGGAGGATTCTCATATCTGAGGTTCCCACAATGGCTATTGAAAAAGTCTTCATTG
CAAATAATACATCTGTGATCCAAGATGAAGTGCTTGCCCACAGATTGGGTCTCATTCCCATCAAGGTTGACCCTAGGCTGTTTGAATATCTTTCAGCAAA
TGATACACCAAATGAAAAGAACACTATTGTCCTCAAACTCCATGCTCGCTGCAATCGGGGCCAGCCTCGCTGTTCAGTGTATTCTCAAGAATTGAAGTGG
TTACCAAATGGAAGTGAGTTTGCTAAAGAATCTGAAAAACCTGATTCCAAACCAAGTACCTATACTTCATTTAGTTGCGGCCAAGACTCCCTGCCAGAAT
TTGCAGGCAATCCAATTTCCACGGTAGAAGATATTATACTTGCCAAACTGGGCCCTGGACAAGAAATTGAACTAGAAGCTCATGCTGTTAAAGGAATGGG
AAAAACACATGCAAAATGGTCTCCTGTGGGGACTGCTTGGTATCGGATGTTTCCTGAGGTTGTATTACTGGAAAACATTAAAGGTGAGGATGCTGAAGAA
CTTATAAGGAAGTGTCCAAGTGGTGTATTTGATATTGAAGACACTGGCAATGCTAAGAAGAAGGCAATTGTAGCTGATTCACGAGCCTGCACTTTGTGTA
GGGAATGCATAAGAGGGGATGAAGAGTGGGAGAAACGTGTGGCACTGCACCGTGTTAAGGATCATTTCATATTTACTATTGAATCAACTGGAGCATTACC
TCCTGAAGTTCTCTTTACTGAAGCTGTGAAGATCTTGGAAGCCAAGTGTGAACGTGTAATTACCGAGCTCTCTTGA
AA sequence
>Potri.001G369500.1 pacid=42790402 polypeptide=Potri.001G369500.1.p locus=Potri.001G369500 ID=Potri.001G369500.1.v4.1 annot-version=v4.1
MSEQESSSDERMSSEEEEEQQQKEEGFSYWNLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYASMGVDNSLRLDSFRENFRIKVIALDKDKM
EFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVLAHRLGLIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQPRCSVYSQELKW
LPNGSEFAKESEKPDSKPSTYTSFSCGQDSLPEFAGNPISTVEDIILAKLGPGQEIELEAHAVKGMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEE
LIRKCPSGVFDIEDTGNAKKKAIVADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAKCERVITELS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G60620 ATRPAC43 RNA polymerase I subunit 43 (.... Potri.001G369500
[exp]
0 1 Pt-ATRPAC42.1
AT3G58660 Ribosomal protein L1p/L10e fam... Potri.012G145000
[exp]
2.23 0.8347
AT1G53645 hydroxyproline-rich glycoprote... Potri.015G137000
[exp]
2.64 0.7924
AT3G22660 rRNA processing protein-relate... Potri.015G131200
[exp]
3.46 0.8086
AT1G69070 unknown protein Potri.010G140100
[exp]
4.89 0.8151
AT4G36680 Tetratricopeptide repeat (TPR)... Potri.007G028400
[exp]
7.74 0.8047
AT4G01560 MEE49 maternal effect embryo arrest ... Potri.014G108400
[exp]
9.79 0.7791
AT5G60960 PNM1 PPR protein localized to the n... Potri.017G133400
[exp]
10.58 0.7709
AT5G27120 NOP56-like pre RNA processing ... Potri.005G045600
[exp]
10.95 0.7898
AT3G55340 PHIP1 phragmoplastin interacting pro... Potri.010G209701
[exp]
11.61 0.7884
AT3G49990 unknown protein Potri.005G234800
[exp]
11.74 0.7993

Potri.001G369500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.