Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 493 / 2e-167 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 484 / 6e-163 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 476 / 1e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G06540 464 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 457 / 6e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 455 / 6e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 455 / 7e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 452 / 2e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 448 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031600 [exp] 508 / 3e-172 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 503 / 9e-172 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G065500 [exp] 499 / 3e-170 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 494 / 9e-167 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 482 / 1e-163 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 484 / 2e-162 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 477 / 4e-162 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 471 / 2e-159 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 468 / 3e-158 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 508 / 6e-174 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 495 / 2e-168 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 494 / 3e-168 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 482 / 3e-162 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 478 / 9e-162 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 476 / 5e-161 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 468 / 1e-158 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 467 / 2e-157 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010909 [exp] 464 / 3e-156 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 464 / 7e-156 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.001G369900.1 pacid=42789806 polypeptide=Potri.001G369900.1.p locus=Potri.001G369900 ID=Potri.001G369900.1.v4.1 annot-version=v4.1 ATGATGTCCTCTTCCTCTCTATCTTCTTCCCTTCACTGTTTCCCACCACCTTCCCCTACTTTCCAAAACCTCAAAAATAATGATCGCCTGATCCACAATT TCAACACTCCACTTGAGCTAAAACAACTCCATGCCCGCCTTATCAAAACCAACACTCCTCTCTCTATCCTCCCTTTAACCAAAGTTGCTTTTGTTTGTGC TCTCTCCCCTTCCTTCTCTTATGCCCACCAAATCTTTTCTCATCTCCTTGAAATACCTCAAACTTCCATTTGGAATTCTTGTTTAATACGTTTTGCTGAG GGTGATTGCCCTTCTAATGCCCTTTTGTTGTTTTATCAAATGCGTTTGTTTGATGTCTTGCCTGATACTTTCACTTGTTCTTTTGTCCTAAAAGCGTGTC TGAAACTATCTGATGTTGTGAATGGTAAAACCATTCATGGGCTTTTTCAGAAGCTTGGGTTTGGCTCAAATTTGTTCTTGCAAAATATGATCTTGAATTT GTATGGTCTGTGTGGGGAGATGGGTGATGCTATGTTGTTGTTTGAGAAAATGCCGCAACGAGATGCTGTTACTTGGAATATAGTGATAGCCCAGTTGGCC AAGAGGGGAGATATTGATGGTGCTTATGGCTTTTTCTTGCGGATGCCTAACAAGAATGTTAGGTCATGGACTTCGATGATTTCGGGTTTTGTTCAGTGTG GCAAACCTAATGAGGCTATTGATTTGTTTATGAAGTTGGAAGATGAAGCGGTGAGGCCGAATGAGGTGACTGTTGTTTCTGTTCTTGCAGCTTGTGCTGA TCTAGGTGATCTAGATCTTGGGAGGATTGTTCATGAATACTCGACAAAAAGTGGGTTTAAGAGAAATGTTCATGTTTGTAATACCTTGATTGATATGTAT GTCAAATGTGGATGCTTGGAGAATGCCAGAAGAGTTTTTTATGAAATGGAAGAACGGACTGTGGTGTCATGGTCAGCAATGATTGCTGGGCTTGCAATGC ATGGACAAGCAGAGGAAGCTCTGTGTCTTTTCTCTGAGATGATCAAACTAGGTGTGAAGCCTAATGGGGTTACTTTTATTGGGCTCTTGCATGCATGTAG CCACATGGGATTGATTGATGAGGGTCGTAGGTTTTTTGCTAGCATGACTGCGGATTATGGTGTAATTCCACAGATTGAGCATTATGGTTGCGTGGTTGAC CTTTTTAGTAGGGCAGGGCTTCTTGAAGAGGCTCACGAGTTTATCTTGAGCATGCCTATTAAGCCAAATGGAGTGGTGTGGGGGGCTCTCCTTGGTGGGT GCAAAGTTCACAAAAACATTGATTTGGCTGAGGAAGCAATAAAACACCTTTCTGAATTGGATCCTCTTAATGATGGGTACTATGTGGTTATATCAAACAT TTATGCAGAAGCAGAACGATGGGAAGACGCAGCAAGGGTGAGGAAGTTGATGAAAGATCGAGGGGTGAAGAAGACAAGTGGGTGGAGTTCAATCACTGTT AATGGAGTGGTTCATGAGTTTGTTGCTGGAGATCAGACACACCCTCAGGCTGAGGATATATGCAAGATATGGGACAAACTACTGGTCAAAATGAAGCGTA GAGGATATGCACCTAAGACATCTGTAGTTCTGTTGGACATGGAAGAGAAAGAGAAGGAGAAGTTTTTGTATCGTCACAGTGAGAAATTAGCTGTGGTTTT TGGGTTAATGACCACGCCAGAGGGAACACCCATCAGGATTATGAAAAATCTCCGTGTTTGTGAGGACTGCCATGCTGCCTTGAAAATCATATCAGGTATT GTCAGTCGAGAGATAATTGTACGTGACAGAAACCGTTTCCATTGTTTTAGAGATGGCCAGTGTTCTTGTAGGGATTTTTGGTAA
AA sequence Show only first row Show all	>Potri.001G369900.1 pacid=42789806 polypeptide=Potri.001G369900.1.p locus=Potri.001G369900 ID=Potri.001G369900.1.v4.1 annot-version=v4.1 MMSSSSLSSSLHCFPPPSPTFQNLKNNDRLIHNFNTPLELKQLHARLIKTNTPLSILPLTKVAFVCALSPSFSYAHQIFSHLLEIPQTSIWNSCLIRFAE GDCPSNALLLFYQMRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLA KRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMY VKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVD LFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITV NGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIISGI VSREIIVRDRNRFHCFRDGQCSCRDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	0	1
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	3.46	0.9478
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	3.74	0.9514
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	4.00	0.9485
AT1G73090			unknown protein		Potri.010G250100 [exp]	4.69	0.9332
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	7.07	0.9408
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	8.36	0.9333
AT4G20010		PTAC9, OSB2	ORGANELLAR SINGLE-STRANDED DNA...		Potri.001G394200 [exp]	8.48	0.9338
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	8.94	0.9351
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	8.94	0.9430
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	9.48	0.9265

Compare expression of checked genes

Potri.001G369900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.