Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55940 283 / 5e-98 EMB2731 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) AT5G51620 84 / 9e-22 Uncharacterised protein family (UPF0172) (.1), Uncharacterised protein family (UPF0172) (.2), Uncharacterised protein family (UPF0172) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370000 [exp] 377 / 4e-135 AT5G55940 282 / 1e-97 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016647 [exp] 298 / 7e-104 AT5G55940 311 / 2e-109 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) Lus10043155 [exp] 292 / 3e-101 AT5G55940 303 / 2e-105 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1) Lus10032594 [exp] 289 / 2e-100 AT5G55940 305 / 5e-107 embryo defective 2731, Uncharacterised protein family (UPF0172) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF03665 [poplar] [flax] UPF0172 Uncharacterised protein family (UPF0172)
Representative CDS sequence Show only first row Show all	>Potri.001G370200.2 pacid=42791482 polypeptide=Potri.001G370200.2.p locus=Potri.001G370200 ID=Potri.001G370200.2.v4.1 annot-version=v4.1 ATGGGTGGTGGTGGTGGTGAATTGAGATACGAGATTTCACAAAATGCCTACATAAAACTAGTACTCCACTCTCTCAAGCACAAAACTTCCGCCGTCAACG GGGTTTTCGTTGGCAGTTCCTGTGACGATGGTGTCCAGATCATCGACTCTGTTCCTCTGTTCCACAACCACCTAGGTCTCCTGCCTCCTCTCGAGATCTC TCTCATCATGATAGAGGAGTATTATGGCGCTCGAGATTTGGGTATAGTGGGTTACTTTCATGCAAATGAGAGGTCTGATGATGTGGAGCTTGGTAATGTT GCAAAGAATATTGGCGATCACATCTATCGCTACTTTCCCCAAGCTGCCATTCTTTTGTTAGATAACAAAAAGCTTGAAGCTTTGCCAAAGGGGAAAGATC GGCTCCCTGTTATGCAGCTTTATACAAGGGATGCATCCAAGAACTGGAAGCTAGCTGGATCTGATGGAGGCTGCCAATTGACAACTAAGGAACCAGCAGC AAATGCTGTTCTATTGGATTATATTTCATCCAAGAAGTGGGAGGATGTGGTAGACTTTGATGACCACCTTGATGACATTACCAAGGACTGGCTGAATCCA GAACTCTTCAAGTAA
AA sequence Show only first row Show all	>Potri.001G370200.2 pacid=42791482 polypeptide=Potri.001G370200.2.p locus=Potri.001G370200 ID=Potri.001G370200.2.v4.1 annot-version=v4.1 MGGGGGELRYEISQNAYIKLVLHSLKHKTSAVNGVFVGSSCDDGVQIIDSVPLFHNHLGLLPPLEISLIMIEEYYGARDLGIVGYFHANERSDDVELGNV AKNIGDHIYRYFPQAAILLLDNKKLEALPKGKDRLPVMQLYTRDASKNWKLAGSDGGCQLTTKEPAANAVLLDYISSKKWEDVVDFDDHLDDITKDWLNP ELFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Potri.001G370200 [exp]	0	1
AT2G03870		EMB2816	EMBRYO DEFECTIVE 2816, Small n...		Potri.009G064000 [exp]	1.41	0.8147
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.010G033500 [exp]	2.82	0.7768	POR1.2
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Potri.001G052100 [exp]	7.48	0.7502	Pt-KAB1.1
AT2G30050			transducin family protein / WD...		Potri.010G100400 [exp]	9.21	0.7155
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	9.79	0.7672
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	10.24	0.7539	Pt-SMO2.2
AT1G73620			Pathogenesis-related thaumatin...		Potri.012G047800 [exp]	13.74	0.7709
AT4G27380			unknown protein		Potri.001G406900 [exp]	14.83	0.6831
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Potri.005G054500 [exp]	17.43	0.7178
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053300 [exp]	19.49	0.7429

Compare expression of checked genes

Potri.001G370200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.