Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13200 247 / 6e-83 EMB2769 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016651 [exp] 272 / 9e-93 AT3G13200 311 / 3e-108 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1) Lus10022566 [exp] 269 / 1e-91 AT3G13200 307 / 1e-106 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1) Lus10018143 [exp] 67 / 6e-14 AT3G13200 72 / 2e-16 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04889 [poplar] [flax] Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein
Representative CDS sequence Show only first row Show all	>Potri.001G370366.1 pacid=42788537 polypeptide=Potri.001G370366.1.p locus=Potri.001G370366 ID=Potri.001G370366.1.v4.1 annot-version=v4.1 ATGACAACTGCAGCTAGACCTACATGGGCTCCTGCAAAAGGTGGTAATGAACAAGGTGGGACTCGTATTTTCGGCCCATCTCAGAAGTATTCGTCAAGGG ATCTTGCTGCTCATACCACTCTAAAACCAAGAAAGGAAGGGCAAGACACCAAGGAGGAATTGCTGAAGAGGAATCTCCGTGAGGAGTTGGAAGAGCGTGA GCGGAGGCATTTCTCATCAAAGGATAAGTCTTACAATGATGACAGAGATCGTAGAAAGGGTAATCATCTTCTCTTGGAAGGGACAAAGAGGGACACTGAA GATCGTATCATCCCACGAAGTGTGGATGCTGATGATTCTGATGTGGAAGTTAACAATGATGATGATAGTGATGACGACGACGACGACGACGAGGATGACA CAGAAGCTCTCATGGCTGAGCTTGAACGAATAAAGAAGGAAAGAGCAGAGGAGAAGCTCCGGCAGGATCAACTACAAGTAGCTGAAGAGCTTAAAGCCAA GGAAGAGCAGCTTCTTAGAGGAAATCCACTGTTGAATAATACAACCACCACCTTTAACGTGAAAAGAAGGTGGGATGATGATGTGGTCTTCAAGAACCAG GCTCGAGGTGAAACAAAGACTCCTAAGCGCTTCATCAATGACACCATTAGGAATGACTTCCACCGAAAATTCCTGCAGAAATACATGAAATAA
AA sequence Show only first row Show all	>Potri.001G370366.1 pacid=42788537 polypeptide=Potri.001G370366.1.p locus=Potri.001G370366 ID=Potri.001G370366.1.v4.1 annot-version=v4.1 MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDLAAHTTLKPRKEGQDTKEELLKRNLREELEERERRHFSSKDKSYNDDRDRRKGNHLLLEGTKRDTE DRIIPRSVDADDSDVEVNNDDDSDDDDDDDEDDTEALMAELERIKKERAEEKLRQDQLQVAEELKAKEEQLLRGNPLLNNTTTTFNVKRRWDDDVVFKNQ ARGETKTPKRFINDTIRNDFHRKFLQKYMK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Potri.001G370366 [exp]	0	1
AT2G43810			Small nuclear ribonucleoprotei...		Potri.010G178700 [exp]	5.19	0.8784
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G260600 [exp]	5.83	0.8907
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Potri.010G223100 [exp]	8.77	0.8425
AT3G53120		VPS37-1	Modifier of rudimentary (Mod(r...		Potri.016G097000 [exp]	10.39	0.8149
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	10.58	0.8771
					Potri.001G077600 [exp]	12.12	0.8602
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Potri.012G058200 [exp]	13.41	0.8202	Pt-DR1.2
AT5G53330			Ubiquitin-associated/translati...		Potri.015G023600 [exp]	13.56	0.8579
AT4G08550			electron carriers;protein disu...		Potri.002G091200 [exp]	13.78	0.8097
AT2G19270			unknown protein		Potri.006G075000 [exp]	15.65	0.8640

Compare expression of checked genes

Potri.001G370366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.