Plant FIBer expression Database

Potri.001G370500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55960 922 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016650
[exp]
971 / 0 AT5G55960 917 / 0.0 unknown protein
Lus10022565
[exp]
907 / 0 AT5G55960 865 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01594 AI-2E_transport AI-2E family transporter
Representative CDS sequence
>Potri.001G370500.1 pacid=42788923 polypeptide=Potri.001G370500.1.p locus=Potri.001G370500 ID=Potri.001G370500.1.v4.1 annot-version=v4.1
ATGGAATTGGTACCATACACGGACCCAAATTCCAAACAAGATTCCCTTCCATGGCAAGACATGTTTAGATCCGCCTCATACCGTAAACCCTCCACAACCC
CACCCCCACCCTCGCCCCCACAGCCCAACGCGCCACCCCACGCGCCCAATGACCACCATCACCATAACAATAAAACTAGTGCTACTACCTTCTCAGCCTC
AGGTGATCCCCAGGTACGCCTTGCTCTTTACATAGCCATGGCCCATGCTGGTCTTGCTTTCGCTATCTTCATTCTTTATTTCGTATGCAAGCTTTTGCAA
GCGTACTTGAGGCCTATTCAGTGGGCTATTTTGTGTTCTATTCCTTTAAGAGGGATACAACAGACCCTTGTTGCTTTTTGGACTGAGCCTCTCCAGTTAG
GTCTCACTGAGACTGTTCTTGCGGTTCCTGTTTCTATTTTTACGGTTTTTGTAGGCACCCTTGTTGATATTAAGGAGGTCTGTTTAAGGGTTTTTCTTAA
AAAGTCAAAAGGAGACAGTTCTAGGAGACATAGGAGTGGTTTTTCTAAGTTATTAAGGTGGTTGCTGTCATTTGGTGTCTTTGTGATTTCTTATGAGAGG
ATTGGTGGTTTGGGCTCACTCTTGATTCTTGCTTCAGGCTTCTTGTGCAGTACCAAAACTGTAAATTCTACATTTTCCACTGTCTCTTCTCTTAGGAATT
ATAGTTTTAGGCGTAGTTCAATTACCCCATTTTTCACAAGAGGTGTGTTGAAGAGGTTGAAAACCATTGTGGCAATCGGATTGATTGTTGGTATGATTGT
GGGGTCTTTGGCTGGATTGATATTCTTCTCTTACAAGATTGCTGTTGAAGGGAAAGACGCCGTCATCTCATTGAAATCACATGTGGAAGAGAGTAATTAT
GCAGAGAAGCTCGGCATCAAGCAGTGGATGGACGAGAATGATGTTCCTGGAATGGTAGATAAATACACCACAACATTCTATGAAACAGTGTCTGACCAGA
TAGATAGTTTAGCAATGCAGTATAATATGACTGAGTTTGTTACTGGGATTAGGCATTTTGTTATTAGTCCTCCAGCTAATACTTCTCAGCAATCAGTGGC
GTTGATGAGCCCATCTCCTTATACAGAGAAGATGTTGAGCTTAAGGAAGAAAGTTCTCAATCAGGAATGGGGAGAAATCTATACAGAACTGGATGCAATC
TTTAGGGAACTGATATTTACGCGAGAAGATCTAGTTGAAAAGGCAAAGGGGTATGCTGTTCAAGGGATGGAGGTGTCACAGCGTGTATTTGCTAGTAGTG
CATCTGTTTTGGGTGGTGGCGCTAAGCTCATGCTGTCCATTGGAAACTCCATCATTTCTGGAGCAGCAGAGGTTTTCAATTTTGTATCTCAATCAGTGAT
ATTCTTCTGGGTTTTGTATTACCTAATTACATCAGAGTCTGGTGGGGTGACTAATCAAGTGATGGGTATGCTTCCAATTCCAAAACCAGCTAGGATTAGA
TGTGTTGAGGTTCTCGACAAGGCAATTTCTGGAGTTCTCCTGGCTACTGCAGAGATTGCATTCTTTCAGGGATGTCTTACATGGCTTTTGTTTAGACTGT
ATGATATACACTTCTTGTATGTGTCGACCATACTTGCAATTTTCAGCCCCCTGTTTCCTATATTTCCACCTATGTTTGCAACAATTCCAGCTGCTGTGCA
ACTGGTGATGGAAGGGAGATACATACTGGCTGTTAGCCTGTCCATCATTCACATTGTGCTCATGGATTATGGTGCAACTGAAATTCAGGAGGATATACCT
GGTTATAATGAATATCTTACTGGGCTTAGCATCATTGGTGGAATGACACTGTTCCCCTCTGCAATAGAGGGAGCAATCATGGGCCCGTTGATAACAACTG
TTGTAATCGGTCTCAAGGATTTATACGTAGAATTTGTGCTAGAAGAGCCAAAGAAAACCAGTTAG
AA sequence
>Potri.001G370500.1 pacid=42788923 polypeptide=Potri.001G370500.1.p locus=Potri.001G370500 ID=Potri.001G370500.1.v4.1 annot-version=v4.1
MELVPYTDPNSKQDSLPWQDMFRSASYRKPSTTPPPPSPPQPNAPPHAPNDHHHHNNKTSATTFSASGDPQVRLALYIAMAHAGLAFAIFILYFVCKLLQ
AYLRPIQWAILCSIPLRGIQQTLVAFWTEPLQLGLTETVLAVPVSIFTVFVGTLVDIKEVCLRVFLKKSKGDSSRRHRSGFSKLLRWLLSFGVFVISYER
IGGLGSLLILASGFLCSTKTVNSTFSTVSSLRNYSFRRSSITPFFTRGVLKRLKTIVAIGLIVGMIVGSLAGLIFFSYKIAVEGKDAVISLKSHVEESNY
AEKLGIKQWMDENDVPGMVDKYTTTFYETVSDQIDSLAMQYNMTEFVTGIRHFVISPPANTSQQSVALMSPSPYTEKMLSLRKKVLNQEWGEIYTELDAI
FRELIFTREDLVEKAKGYAVQGMEVSQRVFASSASVLGGGAKLMLSIGNSIISGAAEVFNFVSQSVIFFWVLYYLITSESGGVTNQVMGMLPIPKPARIR
CVEVLDKAISGVLLATAEIAFFQGCLTWLLFRLYDIHFLYVSTILAIFSPLFPIFPPMFATIPAAVQLVMEGRYILAVSLSIIHIVLMDYGATEIQEDIP
GYNEYLTGLSIIGGMTLFPSAIEGAIMGPLITTVVIGLKDLYVEFVLEEPKKTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G55960 unknown protein Potri.001G370500
[exp]
0 1
AT2G24220 ATPUP5 purine permease 5 (.1.2) Potri.006G184900
[exp]
1.41 0.8470
AT3G20540 PolIB, POLGAMMA... polymerase I B, polymerase gam... Potri.001G421300
[exp]
8.12 0.8401
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.008G217700
[exp]
18.86 0.8171
AT1G63245 CLE14 CLAVATA3/ESR-RELATED 14 (.1) Potri.015G139900
[exp]
25.51 0.8230
AT3G54960 ATPDI1, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Potri.008G040100
[exp]
36.33 0.8102
AT5G12900 unknown protein Potri.001G016600
[exp]
39.23 0.7747
AT1G71040 LPR2 Low Phosphate Root2, Cupredoxi... Potri.010G114200
[exp]
40.00 0.7695
AT3G50950 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.... Potri.006G014400
[exp]
45.72 0.7949
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Potri.015G076200
[exp]
48.00 0.7957 DXR.2
AT5G08520 MYB Duplicated homeodomain-like su... Potri.007G076200
[exp]
64.69 0.7992

Potri.001G370500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.