Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13220 1013 / 0 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT3G52310 525 / 2e-177 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT5G06530 523 / 7e-177 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G31770 478 / 7e-161 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 462 / 3e-154 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT4G27420 453 / 2e-151 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G71960 405 / 1e-132 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT2G01320 239 / 9e-69 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G21090 211 / 6e-59 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT3G55100 201 / 2e-55 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G094650 [exp] 945 / 0 AT3G13220 743 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 550 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 511 / 2e-172 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.010G131900 [exp] 487 / 5e-164 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.004G236500 [exp] 468 / 5e-157 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G404000 [exp] 464 / 5e-156 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 451 / 1e-150 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 447 / 9e-149 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.013G111900 [exp] 411 / 7e-135 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016649 [exp] 1123 / 0 AT3G13220 1055 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10022564 [exp] 1116 / 0 AT3G13220 1057 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10015994 [exp] 514 / 2e-175 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10034775 [exp] 483 / 1e-162 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 477 / 9e-160 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10033314 [exp] 468 / 4e-158 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 471 / 5e-158 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025596 [exp] 459 / 2e-153 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10037283 [exp] 458 / 4e-153 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025597 [exp] 444 / 1e-147 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.001G370600.1 pacid=42788281 polypeptide=Potri.001G370600.1.p locus=Potri.001G370600 ID=Potri.001G370600.1.v4.1 annot-version=v4.1 ATGAATATGGAAACCAAGAGAGAGGAAGAGATAGAGGACATGTCATCACTGTCCCCTCCAACAATGGGGTCTATGCAGATTGCAGGGAGCAACGGGTTTG GCCACAGCATAGACTTCATGTCTGAAGCCTACCTTAGAAATAGGTATTCTGGGATTGATATTGAGGAAGATTGCTTGGCTATGAATAAAGATCGCCCTCT TCCAATATTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGGAATAGCAAAGCTTCCTCTGCCAACCCAGTGAAGGCAGTGGTTTCAAAGGTAGCCTCA CAGCTCAACTTGGATCACGATAACTACAAGATGATTTTGAAGGGTGTAACAGGAAGTGTTTGCCCTGGTGAAATCCTCGCCTTGATGGGTCCTTCTGGTA GTGGTAAGACAACCTTGTTAAAGATAATAGGAGGAAGATTGAGTGAAAATGTTAAAGGAAGAATAACATACGATGACATTGCTTATAATGCAGTCATTAA GAGAAGGATTGGATTTGTGACTCAAGATGATGTGCTCTTACCACAACTCACAGTGGAAGAAACTTTAGTCTTTGCTGCTTTCTTGCGACTTCCAGGAAAC ATGAGCCGGCAACAGAAGTATGCCAGAGTTGAGATGATTATAAAGGAGCTAGGCATCGAAAGATGTCGTCACTCAAGAGTTGGAGGGGGATTTGTTAAGG GGATATCTGGAGGAGAAAGAAAAAGAACCAGCATTGGTTATGAAATTCTCGTCGACCCTTCATTACTGTTACTTGATGAACCAACTTCAGGCCTTGATTC CACATCAGCCAATAGACTCCTTCAAATCCTCCAAGGGCTAGCTAAGGCAGGAAGGACAATAATTACTACAATCCACCAGCCTTCGAGCAGAATATTCCAC ATGTTTGACAAGCTTCTCCTGATATCAGAAGGCTACCCTGTGTACTATGGGAAGGCTAGAGAATCCATGGAATATTTTTCTTGTTTGAGATTCATTCCAG AGATAGCGATGAACCCTGCAGAGTTCTTGCTGGATTTAGCAACCGGGCAAGTGAATGACATAAGTGTGCCTGAAGATCTATCAGCACCACATGGAGTCCT TGATTCTGAAAAGGCAGTAATCAAATACCTTCATCTGAAATACAAAACTCAGCTGGAGCCAAAAGAAAAGGAAGAGAATCACCAGAGCAAAAGGGTACCT GAGCCTCTTCAATTGGCGATCCAAGTAAAAAGGGATTGGACACTTAGTTGGTGGGAGCAGTTCGTCATAATGTACAAGAGAACATTTAGAGAGAGGTGTA GAGATTATTTCGATAAGCTGAGGCTCGTCCAGGCACTAGGAGTAGCAGTATTGCTAGGCCTTCTTTGGTGGAAATCAAAAACTGGAACTGAGGCTCAATT AAGGGACCAGGTTGGTTTAATGTTCTACATCTGCATTTTCTGGACATCATCATCAATATTCGGAGCAGTATATGTCTTTCCATTCGAGAAGATCTATTTG GTGAAAGAAAGGAAAGCAGACATGTACAGACTAAGTGTATACTATGTGTGCAGCACTCTGAGTGACATGGTAGCTCATGTATTCTATCCAACATTTTTCA TGGTCATAGTGTACTTCATGGCAGGGTTCAAGAGAACAGTCCCTTGCTTCTTCTTCACACTGTTTGTCATGCTATTGATAGTCATCACAAGCCAAGGAGT GGGAGAGCTATGTGGAGCTGCAAGTTTGAGTATCAAAAGAGCTGGGATGTTTGCTTCTTTGATATTAATGTTGTTTCTTCTTACTGGAGGTTACTACGTC CAGCACATTCCGAAATTCATGCAGTGGATGAAGTTCTTGTCTTTCATGTTCTACGGGTTTAGGCTTTTGTTAAAAGTGCAGTATGATGGTGATGAATTAT ACGAGTGCGAGAGCGAAGGAGGGTGTCGGCCTCTGCAGAGCTCACCTTCATTTGACATGGTTAACCTGAAAGGTGGCTTGCAAGAAGTCTGGGTGCTGCT AGCCATGGCTCTTGGATACCGGCTAATTGCTTATTTTTGTCTCCGCAGGAGGATTAATTTATGTCATCTTTGA
AA sequence Show only first row Show all	>Potri.001G370600.1 pacid=42788281 polypeptide=Potri.001G370600.1.p locus=Potri.001G370600 ID=Potri.001G370600.1.v4.1 annot-version=v4.1 MNMETKREEEIEDMSSLSPPTMGSMQIAGSNGFGHSIDFMSEAYLRNRYSGIDIEEDCLAMNKDRPLPIFLKFEDVEYKVRNSKASSANPVKAVVSKVAS QLNLDHDNYKMILKGVTGSVCPGEILALMGPSGSGKTTLLKIIGGRLSENVKGRITYDDIAYNAVIKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN MSRQQKYARVEMIIKELGIERCRHSRVGGGFVKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLQILQGLAKAGRTIITTIHQPSSRIFH MFDKLLLISEGYPVYYGKARESMEYFSCLRFIPEIAMNPAEFLLDLATGQVNDISVPEDLSAPHGVLDSEKAVIKYLHLKYKTQLEPKEKEENHQSKRVP EPLQLAIQVKRDWTLSWWEQFVIMYKRTFRERCRDYFDKLRLVQALGVAVLLGLLWWKSKTGTEAQLRDQVGLMFYICIFWTSSSIFGAVYVFPFEKIYL VKERKADMYRLSVYYVCSTLSDMVAHVFYPTFFMVIVYFMAGFKRTVPCFFFTLFVMLLIVITSQGVGELCGAASLSIKRAGMFASLILMLFLLTGGYYV QHIPKFMQWMKFLSFMFYGFRLLLKVQYDGDELYECESEGGCRPLQSSPSFDMVNLKGGLQEVWVLLAMALGYRLIAYFCLRRRINLCHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Potri.001G370600 [exp]	0	1
					Potri.006G190850 [exp]	2.44	0.8926
AT5G16330			NC domain-containing protein-r...		Potri.005G056300 [exp]	3.74	0.8873
AT4G13230			Late embryogenesis abundant pr...		Potri.002G252100 [exp]	4.58	0.8550
					Potri.008G146450 [exp]	5.47	0.8355
AT4G33820			Glycosyl hydrolase superfamily...		Potri.009G087600 [exp]	6.00	0.8298
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	8.00	0.7789
					Potri.010G080267 [exp]	8.94	0.6969
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	10.95	0.6771
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107800 [exp]	20.19	0.6070	Pt-LEA1.4
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	22.36	0.6034

Compare expression of checked genes

Potri.001G370600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.