Plant FIBer expression Database

Potri.001G370700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55830 329 / 1e-107 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05667 DUF812 Protein of unknown function (DUF812)
Representative CDS sequence
>Potri.001G370700.2 pacid=42791632 polypeptide=Potri.001G370700.2.p locus=Potri.001G370700 ID=Potri.001G370700.2.v4.1 annot-version=v4.1
ATGATGGAAGAATCAGAATCTCGTAAGCAGACACTGTTAAGTTCACTCGAAAGCGCCGGCATTTGGATCCCGGACAACGTTACATCGATCGGAGACTTGA
GTCCGGAAACCTTCGTCTCCATCTGCGCTCAGTGTGTTAATTTGATAGATCAAACGGCTTCGTTGCCTACAACTCTGCCGGATGCGGCGATTGACAAGCT
GAAGATGTGTGCGGACATGGGTTTAGCTATAAAGCGACTTGGTTTTATTGGAGACATGAGCTATATTAAGCTCCTCTATCCTTCTGAAGATGACCTCCAT
AAGTTGACTAGATTCTTGGTGGAGAGGCTTACTGAGTCGACTCGACCTGTCAAAATAGCTGAGGTGAAGGATGTGAATGCTAGAGGGAAAACCAAGGAGG
ATGGCTCTAATATTGGTGGAAGGTTAGATCTTAATCATCAGAGAGAAAAATTGGAAGATCCTAGTCTCCATAATGCAGTGCCAGAGGCTGAAGACATACC
CTTTATTGGCTTGAGCAGACAAAATCTCGGCAAGGACAAGTTACCTGCTTTTTTTTATGGAGAACTTTTTGATGAAGAAGGAAAGTCAGGAAGAGATCTG
TTTGGAAATGAAGAAACAGCTGCCGCGGGAGATGATAAGGATGTTCAGAAAGCGATTTCTATTGAAGAGCAGCCATCCATGGTAATAATTGAGAAAGAAG
AATTAAGAAATGAAGAAAAAGTGCTCACAGAGGAGGTTACTGCAAAGACATCAGAATTACAGCATCTTGAGGAAGAACTTGAATTGTTAAAGGCAGCAGC
AGAAATGGCATTTGGTGATCAGAATTCTATTGACTTCTGCTTTGAGCAGCTTAAAGGGCAAGTGGATGCCAAAAGGTGCAATATTACAGAATTGAAGTCA
CAGTGGGATGCTTTCAGAATGCCTCTGGAAGACAAGAAGAGAAACCTAGAGGAGTCCCTGTATGCAAACATACCAGGTTCTCAAGAAAAGCTCCAAAAGT
TGAGGGAACTTGAGCACGAAAAACAGTTGGTGTTGTCTGAAATTACAAAGAGGGAGGAGGAACATTCTAAACTTTCTGCAGATCTTGAGAAGCAGCCTAA
ACTTCCATCTAGAACATCCTATATTGAGCGGATAAAGGAGATTACAAAAAGTAGTCAGAAACAGGATGCTGATATAAAGAGGATCTTAAAAGAAACTAGG
GAGCTTCAGTTGGAGAGTAACTCTATCCAAGATCGCCTTCATCGAACATATGCTGTTCTAGATGAAATAGTGTGTAGGGAAGCAAAGAGAGACCTGGTAG
GACGGAAGGCTTATAGGCTCCTCACTAGCTTACACGACTGCTTCGGTCAGATTTCTGAGAAAATCCTTACCACTGATAGAATAAGCAGAGAAATGACTGA
ACTTGAAAAGAAGCTAGCAGCCATGGCGTCCCGAAGTTTAAACGTGGATAAGCTGCAAGCAGACCTTGATGCCATTGTGAAGGAAAATGAGTGCCTGGAG
CTACGCCTTGCAGAAAACCCATGA
AA sequence
>Potri.001G370700.2 pacid=42791632 polypeptide=Potri.001G370700.2.p locus=Potri.001G370700 ID=Potri.001G370700.2.v4.1 annot-version=v4.1
MMEESESRKQTLLSSLESAGIWIPDNVTSIGDLSPETFVSICAQCVNLIDQTASLPTTLPDAAIDKLKMCADMGLAIKRLGFIGDMSYIKLLYPSEDDLH
KLTRFLVERLTESTRPVKIAEVKDVNARGKTKEDGSNIGGRLDLNHQREKLEDPSLHNAVPEAEDIPFIGLSRQNLGKDKLPAFFYGELFDEEGKSGRDL
FGNEETAAAGDDKDVQKAISIEEQPSMVIIEKEELRNEEKVLTEEVTAKTSELQHLEEELELLKAAAEMAFGDQNSIDFCFEQLKGQVDAKRCNITELKS
QWDAFRMPLEDKKRNLEESLYANIPGSQEKLQKLRELEHEKQLVLSEITKREEEHSKLSADLEKQPKLPSRTSYIERIKEITKSSQKQDADIKRILKETR
ELQLESNSIQDRLHRTYAVLDEIVCREAKRDLVGRKAYRLLTSLHDCFGQISEKILTTDRISREMTELEKKLAAMASRSLNVDKLQADLDAIVKENECLE
LRLAENP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55830 unknown protein Potri.001G370700
[exp]
0 1
AT5G55950 Nucleotide/sugar transporter f... Potri.001G370800
[exp]
2.64 0.9119
AT1G33230 TMPIT-like protein (.1) Potri.011G147500
[exp]
9.27 0.8644
AT5G12870 MYB ATMYB46 myb domain protein 46 (.1) Potri.001G258700
[exp]
11.22 0.8582
AT5G20120 unknown protein Potri.018G066700
[exp]
13.22 0.7792
AT5G58380 PKS2, CIPK10, S... SNF1-RELATED PROTEIN KINASE 3.... Potri.019G048800
[exp]
16.24 0.8622
AT5G01460 LMBR1-like membrane protein (.... Potri.016G116200
[exp]
16.43 0.8632
AT3G56190 ASNAP, ALPHA-SN... alpha-soluble NSF attachment p... Potri.008G075400
[exp]
21.33 0.8592 ASNAP.1
AT2G15570 TRX-M3, GAT1, A... THIOREDOXIN-M3, GFP ARRESTED T... Potri.009G100700
[exp]
26.83 0.8147 ATHM3.1,PtrTrxm5
AT5G05570 transducin family protein / WD... Potri.008G069700
[exp]
27.01 0.8511
AT5G61840 GUT1, IRX10-L Exostosin family protein (.1) Potri.012G109600
[exp]
28.14 0.8508

Potri.001G370700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.