Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13222 94 / 1e-19 GIP1 GBF-interacting protein 1 (.1) AT1G55820 91 / 7e-19 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 63 / 8e-10 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT4G18150 57 / 5e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 46 / 0.0001 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 45 / 0.0003 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 44 / 0.0003 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079800 [exp] 858 / 0 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 151 / 1e-37 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 149 / 7e-37 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 65 / 2e-10 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 62 / 1e-09 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.002G059300 [exp] 59 / 2e-08 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 49 / 1e-05 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 49 / 2e-05 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036414 [exp] 148 / 1e-36 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 147 / 3e-36 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015640 [exp] 62 / 1e-09 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10037658 [exp] 61 / 3e-09 AT3G13990 560 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10025382 [exp] 51 / 5e-06 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 50 / 7e-06 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 47 / 4e-05 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 42 / 8e-05 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF06972 [poplar] [flax] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Potri.001G370900.2 pacid=42793453 polypeptide=Potri.001G370900.2.p locus=Potri.001G370900 ID=Potri.001G370900.2.v4.1 annot-version=v4.1 ATGAGCAATCGTGGCGGCGGTGGCAGCTTTGTAACGATCCCGAAGAATGTCAAGAAAACAATACAAAGCATTAGAGAAATCACAGGCAAACAACACAGTG ATGAGGATATTTACTCTGTTCTTCAAGACTGTGCTATGGATCTTGATGATACTGCGCAAAAGCTCCTTTATTTAGATACATTTCATGAAGTCAAGAGGAA ACATGATCGTAGAAAGGGGGCTCAAGACAGAGGGGCTAGGGGTGGTCGAGGAAGCTATTCTGGTGCCGGTGGTGGGAGGAATGCGGCTGCTCGAAGGGAA AATGGAGTCGATTGCATGGCAGACAGAAATGCTTCAACATCTTCGCACTCTATGCAGAAGACAAATAATAATGCAGCGATTCCTGGGACAAAAGATTTAA CTGCCACACCCCATGGTCCCTCAACTTTATCCAATGGGAGTTCTATTCTTGGATATGGTCCAAAGCTGCCTGCTGATGCAGGTAGTTCAGTTCTTGATGT GAAGAAGTTAGATGCCTCTTCCCCGCTACCTGCAGCAAGTCCCTCAGCACCTACACAAATTTCTATCTCTGGAATGCAATCTAAGGAAGGAAAGTCCACA TCATTTCCCAATGGCCTCCCAACTTCTACCACTCCAGCATCTGTATCTGGTTCTGTATCTTCTTTTTCAGACCCCATATTAGCCCCATCAATGACTAGAA ATCCTGGTGCTGCTGGTACAATCACACACGAAGTGGGTAGCCAGAAGAAAGGTGCTGAACAGAATCATATTCAAGGAAACAAAAAAGTATCACCTATCAA ACCAAAGGCAGCTGGAAAGAATCAATTGTCTGAATCTCTGCAGCCCTCAACTTTGTTTGCATATGATGATTCTTTGGTTGTCAAGTCTTCTAGTAATGAT AGTCATTCATCAGAAGAGTTGGCTTTGCCTTTAAAAACAGTCTTGTCAGAGGATGCTGAAGCTAAAGTCAGTTCTCAGTCACTGCCAGAACCAATCATCT CTAATGGACATGTTAAATTTCCGAATCATTATAAAGTCCCTGAAGCTCTAAAAAGTGGTTTGACATTTGGAAGCTTTGATACAAATTCTGGACCAAGAAA GGAATATAGCAATGGTGATTTGACTTTTGGAAGCTTTGATACTAATTCTGGACCAGGAGCAAAATGCAGCAATGGTATTGATGGTGACATTAACTCTATG CATGCTATTGAACTTGCACATCTGACTGATGAAACTGCCATGGAACCTTCTAGCAATGATAGTGGATCAACACCTGTGCAATTTAATCATTCTGATCAAC CAGAGTCTCCTATACATGTGCTTGAAAAAGTATCAATATCAGAGGGCAATGTTGATCCTAGTGCAGACTCGGGGGCTGTTCAGCCAAAGCAGGATGAGAT GTTGCTTCCAGAAGGCCATCAGAGCTCCACTGTTCAAATTGCACCAAACTATGGTTTTGGGATCATGCCACCCATGCAGGCCGCTCACCTTGTACCATTC GCAGGACATGAGACACAGGCATGGGATGTTTCTCAAACTACAGGCTTTGTTGGTAAGAATTCTATGGCCTCATCTACTCCAAGTCCGAGTCAACAGATGC AGAATTCTGTTGCTGCTTCTCCGCATCCACTTCTTTTCAGGCCTCCATATCCTCCTAACTATCTTCAGTACGGGCACTACTTCAATCCATATTTTTTGCC ACCAATGCATCAATTCTTGAGCCACAATGGGCTCCCTCAACAGCCATCGACTGGCAATGCATATCTTACAGCAGCACCTACTGCTGCTGGTGTCAAGTTC CCTCTTCCACAATTTAAGCCAGGAACTAGTGCTGGAAGCCCAGCTCCAATTGCACTCCCCATTTTGTACGGATCATATGGCTCTTCCTCTACGGGCTTCA ATCCTAGTCCAGCTGTAACCTCTGGAAGCTCCACTGGTAATGATGATCTATCAGCATCTCAGCTGAAGGAAAGAAACATCTACACCACAGGACCACTGGC GATGCAGAGTGAAATTTCATCTTGGATTCCTCCACCTGGGCAAGATATATCCAGCTTGCAGCTCAGTTCTTTATACCACCTTCACCCTCAGGGACAGCAC CTCACCTTCTCTCCACAGGCTGGTCTTGCCGCCTTTCCTGGAATTTATCCACCAGTGCAAACAGTGGCTGCACCTTCAGCTGTTAATCAACTCACGCAAC AGTCACAGACCATGCCTACAACTGCTGAACCTGTGGTACCTCCACCTGGTCCTTATCAGCAGCCTCAACTTACACAGATCAACTGGAACTCTTAA
AA sequence Show only first row Show all	>Potri.001G370900.2 pacid=42793453 polypeptide=Potri.001G370900.2.p locus=Potri.001G370900 ID=Potri.001G370900.2.v4.1 annot-version=v4.1 MSNRGGGGSFVTIPKNVKKTIQSIREITGKQHSDEDIYSVLQDCAMDLDDTAQKLLYLDTFHEVKRKHDRRKGAQDRGARGGRGSYSGAGGGRNAAARRE NGVDCMADRNASTSSHSMQKTNNNAAIPGTKDLTATPHGPSTLSNGSSILGYGPKLPADAGSSVLDVKKLDASSPLPAASPSAPTQISISGMQSKEGKST SFPNGLPTSTTPASVSGSVSSFSDPILAPSMTRNPGAAGTITHEVGSQKKGAEQNHIQGNKKVSPIKPKAAGKNQLSESLQPSTLFAYDDSLVVKSSSND SHSSEELALPLKTVLSEDAEAKVSSQSLPEPIISNGHVKFPNHYKVPEALKSGLTFGSFDTNSGPRKEYSNGDLTFGSFDTNSGPGAKCSNGIDGDINSM HAIELAHLTDETAMEPSSNDSGSTPVQFNHSDQPESPIHVLEKVSISEGNVDPSADSGAVQPKQDEMLLPEGHQSSTVQIAPNYGFGIMPPMQAAHLVPF AGHETQAWDVSQTTGFVGKNSMASSTPSPSQQMQNSVAASPHPLLFRPPYPPNYLQYGHYFNPYFLPPMHQFLSHNGLPQQPSTGNAYLTAAPTAAGVKF PLPQFKPGTSAGSPAPIALPILYGSYGSSSTGFNPSPAVTSGSSTGNDDLSASQLKERNIYTTGPLAMQSEISSWIPPPGQDISSLQLSSLYHLHPQGQH LTFSPQAGLAAFPGIYPPVQTVAAPSAVNQLTQQSQTMPTTAEPVVPPPGPYQQPQLTQINWNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07660			Kinase-related protein of unkn...		Potri.001G370900 [exp]	0	1
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.013G023100 [exp]	4.00	0.7256
AT1G31870			unknown protein		Potri.001G147100 [exp]	17.20	0.7048
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Potri.006G054500 [exp]	22.84	0.6931	Pt-DREB2.1
AT5G02520			unknown protein		Potri.004G077400 [exp]	27.74	0.6800
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	30.72	0.6678
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	39.68	0.6385
AT5G08550		ILP1	increased level of polyploidy1...		Potri.006G020200 [exp]	41.82	0.6328
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	42.04	0.6676
AT2G47830			Cation efflux family protein (...		Potri.002G209023 [exp]	49.17	0.6540
AT2G20110	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G039300 [exp]	49.79	0.6438

Compare expression of checked genes

Potri.001G370900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.