Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45249 59 / 9e-10 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT2G36270 53 / 8e-08 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G49720 52 / 2e-07 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G19290 51 / 3e-07 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G35900 50 / 4e-07 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G44080 48 / 2e-06 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G41070 48 / 2e-06 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT4G34000 47 / 5e-06 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G56850 47 / 6e-06 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G17770 45 / 9e-06 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G125400 [exp] 55 / 2e-08 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G164500 [exp] 51 / 3e-07 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.014G028200 [exp] 51 / 3e-07 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.005G243400 [exp] 50 / 3e-07 AT4G35900 117 / 4e-31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G109500 [exp] 50 / 6e-07 AT4G35900 179 / 5e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G018400 [exp] 49 / 7e-07 AT4G35900 133 / 5e-38 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G248300 [exp] 46 / 1e-05 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.009G101200 [exp] 46 / 1e-05 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.006G083000 [exp] 45 / 2e-05 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009755 [exp] 55 / 2e-08 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10017049 [exp] 55 / 2e-08 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 54 / 3e-08 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10006489 [exp] 53 / 1e-07 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10014194 [exp] 52 / 2e-07 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 52 / 2e-07 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002399 [exp] 50 / 9e-07 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10027897 [exp] 48 / 4e-06 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10014066 [exp] 46 / 1e-05 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10008927 [exp] 44 / 2e-05 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF07716 [poplar] [flax] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.001G371300.1 pacid=42787970 polypeptide=Potri.001G371300.1.p locus=Potri.001G371300 ID=Potri.001G371300.1.v4.1 annot-version=v4.1 ATGTTACCTCCATCTCAAGAAGATGAATTAAAGGCTTCTCATTTTACTGCTTTATCTTTAAGCACAGATATCCAGGTTTCCCAGCAAATCCATATTCCAT CTCAGGTTGCTAAGAAGGTGCAGAGCACAAGCCTTCCATACACAAGAAACAGTGCAAGTCCAATGAAGGTTAAGAGGAAAAGATGCCTCGATGGAGCAGC ATTGACTATAGGAACCGGGTCTAGTTCAAACCTGCTCAAAATGAAAGGAGTTGATCATCCAACCGAACAGGTGAGCTGTGCTAGCTTAGGTGGTGATTAT AGTCGGAAACAGCCACCTCCAATTGCTGCTGTGTCTGGTTTGGTCAATACAAGTGAAGCGAGAGTTGTTGATGAGGCAAGCCCTTACCATCAATTTGTAC GAGGAGTTAGAAGTGGAAATGCAAACAAAAAGAATGATGACAGAAGAGCTGGTACGGATAGTACCAGTTATGTGAATGCTCTCAACAGGGCGTGCCTCTA TCAGCAATCTGCAAGTGGGATTAGCTGTGAAAATGATAGCAAAAAGAATGCTCATCCCAGAGCTAGAAGAACTTGTGGAAAGACATCAATTTCTGATAAA ATCCAGCACAGGATGATAAAAAATCGAGAATCAGCTGCCAGGTCTAGAGCAAGGAAACAAGCTTTGGAAGCCCAACAGCAAGTGGAAAATACAGAGCTTA AGAAGGAGAATGACCTCCTGAAAAGGGCTGTGAGGTTTCTCTTGGCTATATTAAGGACAAAACGCATGAAGCTGCCAGCACTTTCAAGGAGTTTCTCAGC ACCCTTATAA
AA sequence Show only first row Show all	>Potri.001G371300.1 pacid=42787970 polypeptide=Potri.001G371300.1.p locus=Potri.001G371300 ID=Potri.001G371300.1.v4.1 annot-version=v4.1 MLPPSQEDELKASHFTALSLSTDIQVSQQIHIPSQVAKKVQSTSLPYTRNSASPMKVKRKRCLDGAALTIGTGSSSNLLKMKGVDHPTEQVSCASLGGDY SRKQPPPIAAVSGLVNTSEARVVDEASPYHQFVRGVRSGNANKKNDDRRAGTDSTSYVNALNRACLYQQSASGISCENDSKKNAHPRARRTCGKTSISDK IQHRMIKNRESAARSRARKQALEAQQQVENTELKKENDLLKRAVRFLLAILRTKRMKLPALSRSFSAPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.001G371300 [exp]	0	1
AT5G59460			scarecrow-like transcription f...		Potri.001G242104 [exp]	7.74	0.8586
AT1G33430			Galactosyltransferase family p...		Potri.019G067300 [exp]	8.36	0.9045
					Potri.010G000301 [exp]	10.00	1.0000
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107100 [exp]	18.43	0.5129
					Potri.004G074602 [exp]	39.49	0.5681
AT3G01820			P-loop containing nucleoside t...		Potri.012G095700 [exp]	43.74	0.6481
AT4G23760			Cox19-like CHCH family protein...		Potri.001G094750 [exp]	78.76	0.4456
					Potri.001G165120 [exp]	86.42	0.4577
AT2G33100		ATCSLD1	CELLULOSE-SYNTHASE LIKE D1, ce...		Potri.001G050200 [exp]	87.57	0.3989	Pt-ATCSLD1.2
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Potri.008G138600 [exp]	98.77	0.4966

Compare expression of checked genes

Potri.001G371300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.