Plant FIBer expression Database

Potri.001G371600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13225 219 / 2e-59 WW domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010578
[exp]
303 / 6e-91 AT3G13225 231 / 3e-65 WW domain-containing protein (.1.2)
Lus10005845
[exp]
296 / 2e-85 AT3G13225 410 / 1e-128 WW domain-containing protein (.1.2)
Lus10010579
[exp]
218 / 6e-61 AT3G13225 249 / 1e-73 WW domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0680 WW PF00397 WW WW domain
Representative CDS sequence
>Potri.001G371600.1 pacid=42791734 polypeptide=Potri.001G371600.1.p locus=Potri.001G371600 ID=Potri.001G371600.1.v4.1 annot-version=v4.1
ATGGGGAAGAGAAAAGAGCGCCGCCTTGCTGCTGTGAGTAACGCCGGCCGTCGCATCAAGCTCGATCTCTTCGCGGAACCCTCTGGAGATTTGGGTGGCT
CCTCTGTAAATAACGGAGTTGGAGGGGATATAGATCCGTCACAACGTGCTGAATTACCCAATTCACCATCATCTTCAGGTCAACTGCCACAGAACCCGCT
TCTGTTACTTGGGCAATATAGTGATGATGATTTAGATGAGGAATCAAGTAAAAGGCCAGACAGTTCTATTGCAGTGAATTCCCCAGCTGACCATAATGAC
CAGGAGGCGCCTATTGGTGAAGGAAAAGGTGGAAATTCCAATGCTCTTGAAGATCTCACCACACAGGAGGTTGATCAACAGGACATGAGGAGAGATTCTA
TGTCAGTTGATGTTTTAGAGGGCCTGGAAGGTGGTGATTCTAGGGAAAGCGATGCTACTGCCTCAGCTGATACATTGAAAGAAAAGGATTCGTTGGAGAA
AATCTCTATCACTGGAATTTCTAATGCACAGGCTATTGGAGATGTGAGTTCAGGCTGGAGGATGGTAGTGCATGAAGAGAGTAATCAGTACTATTACTGG
AATACTGAAACTGGTGAAACTTCCTGGGAAATACCGGCTGTTTTGGCTCAGCAAAATCAATTGACCTCTGATCAGAACGCATGTGCTGCTGAATATATGG
AAACTGCTCACATGGGTGCAAATTTGTCTACTTCAACTTTAGCTGCTGGATTGGATAGTTCTTTACCTGCATTATTAGTAGAGGGTTCAGTAGGTAATGA
TTTGATTCCTCAAAGCACAGAAGTGTATGGAAATGAGCCACAGATGAATGACTGGGTTGAAGGATACAGAAATGAATATGTGAAAGATAAAAATTGGGAT
GCTGAAGCTCATCAGGGGGAGACACAGAGTAACTTTGCTGCAATTAATACCTCTTTGGGTGATGTGAGTTCGGTAGTTTCGGAGCACATACACGATGCAC
TAGCTAATGATCATAGAGGAATAGATCTTTCAACTAGTCTCATGAAACAATGTGAGAGTTTGTTGGAGAGACTAGAGTCATTGAAAGGGTATGGGAGTCA
TCTGCAAGGTCAAGACCAGATGCTGAAGTATAATCTAGAAGTAGAGATAAGACTTTCTGATATCAAGTCACTTTCAACTTATGGTTCACCTTTGCTTCCA
TTTTGGGTCCATTGCGAAAGGCGACTTAAACAATTAGAAGATGTCATTAACAATGAAATTTACCAGCTTGCAGTGTCCGCACAAATGGATGGTGATGTTG
AAACTACTGCTGATGATTCTTTTAAAGAAAAGGAAAAATCTCAAGAAAATATGGGTGAAGAATCTGAAGCAGATGCACATGAGAACAGTACAAAATCTGA
AGTTTCACCTGTTTCTACTAGCATTGAGAACGATTCACATGATAAAGGTGACTTTGGAAGTATCCATTCTAGCAATATTCTTGCAGGATCTCCTAGCATG
CATTTGGAAGGTGGTGCTCCAGTTAGTGAAGAATTGAATGGGACTATTCATCTGAATGCTGAGATCCATCCTGCTGAAGATATTGACATGGATGTAGACA
TGGAAGTTGAAGAGGGAGAGTTTTGTCCTGCAAGCATCACTACTTTTGGAGATGCTTTGAGTGCTGAAGATGTTGGACTGAATGAGAAAATGGTTCAGTC
AAATCCACCTGCAGAGCACCTGTCCTTGTCATCAGGGGATGCATTGACTGTTCCACCTCCTCCAGATGAGGAATGGATTCCCCCGCCACCACCTGATAAT
GATCAGGTCCCTCCACCCCCTCCTGATAATGAACAAGTTCCTCCACCCCCACCAGATGAACCTCCTGAATGCTCATATCCTCCACTTCCATCTTATCCAG
AGACAGGTCAACCTCTCCCTTACGCAGAACAATACAACTTAACCTATCCGGACCTCAATTTCCAATACTATGGACACACAGTTGCTGTCCCAAGTTGTAA
TTTCTATGGAAATACTGATGGAAGTCAGGCTGCTGTGCCACATGCATCACTTTATTACCTAGCAACTCCTAGCACATATGTTGAAACTGATTCAGTTATG
GTCAATTCTGTTCAGCCAGTAGAATATTACAATGTTCAAGATGGATCAGTGCCTGTGCCTGTTGTTAGTGGTGTAGAATCTTCTCAGTCATATATTGAAT
CTGGTCCTGTGAGTTATGATACCCTTGCTTCTGATCAAATAAAGACAGGCGACTCTGTAGCAGAGCTGAATGTGAAGCTTGGTGGCTCGGCTGTTGGTGT
TGAGACTTATTTGGCATCTAAAGGGGTTCCTTCTACTCTGACCACCACTGAAGCTCCTACATTAGCTAGTGTGAAAGAGACTGCTTATGCATCATCAACC
AATGCAGTCACTGCTTCTACTGCAGCAGCTGCATCTGCCTTGTTAACAGGTGCCAAGGTTCAAACTAAAGTTTCACGTAAAAAGCGGACAGTTGCTGTTG
CACCCTCTTTGAGGTCTAATAAGAAAGTCTCCAGTTTGGTGGACAAGTGGAAAGCAGCCAAAGAGGAGTTGAATGAGAATGAGGAAGAAGAACCTAAAAG
TGCTTATGAGATATTTGAGAAGAAGCGGCAAAGGGAAATTGAGGAGTGGCATGCTAAGCAAATTGCCAGTGGAGAGGCCAAGGATAATGCTAACTTTCAG
CCTCTGGGTGGTGACTGGCGCGAGCGAGTAAAGCGCAGGAGAGCTCAAGCAGCTAAAGCAGCTGCATTGACTCCGTCGGAGGCCCCAACTGATGAAAACA
AGCAGCCTGATTTAGAAGAACTCTCAAAGGGCCTTCCATCTGGCTGGCAGGTCTATTGGGATGGATCATCAAAACAGGTCTATTATGGTAATGTCATCAC
CTCGGAGACAACCTGGACCAGGCCACCGAAATGA
AA sequence
>Potri.001G371600.1 pacid=42791734 polypeptide=Potri.001G371600.1.p locus=Potri.001G371600 ID=Potri.001G371600.1.v4.1 annot-version=v4.1
MGKRKERRLAAVSNAGRRIKLDLFAEPSGDLGGSSVNNGVGGDIDPSQRAELPNSPSSSGQLPQNPLLLLGQYSDDDLDEESSKRPDSSIAVNSPADHND
QEAPIGEGKGGNSNALEDLTTQEVDQQDMRRDSMSVDVLEGLEGGDSRESDATASADTLKEKDSLEKISITGISNAQAIGDVSSGWRMVVHEESNQYYYW
NTETGETSWEIPAVLAQQNQLTSDQNACAAEYMETAHMGANLSTSTLAAGLDSSLPALLVEGSVGNDLIPQSTEVYGNEPQMNDWVEGYRNEYVKDKNWD
AEAHQGETQSNFAAINTSLGDVSSVVSEHIHDALANDHRGIDLSTSLMKQCESLLERLESLKGYGSHLQGQDQMLKYNLEVEIRLSDIKSLSTYGSPLLP
FWVHCERRLKQLEDVINNEIYQLAVSAQMDGDVETTADDSFKEKEKSQENMGEESEADAHENSTKSEVSPVSTSIENDSHDKGDFGSIHSSNILAGSPSM
HLEGGAPVSEELNGTIHLNAEIHPAEDIDMDVDMEVEEGEFCPASITTFGDALSAEDVGLNEKMVQSNPPAEHLSLSSGDALTVPPPPDEEWIPPPPPDN
DQVPPPPPDNEQVPPPPPDEPPECSYPPLPSYPETGQPLPYAEQYNLTYPDLNFQYYGHTVAVPSCNFYGNTDGSQAAVPHASLYYLATPSTYVETDSVM
VNSVQPVEYYNVQDGSVPVPVVSGVESSQSYIESGPVSYDTLASDQIKTGDSVAELNVKLGGSAVGVETYLASKGVPSTLTTTEAPTLASVKETAYASST
NAVTASTAAAASALLTGAKVQTKVSRKKRTVAVAPSLRSNKKVSSLVDKWKAAKEELNENEEEEPKSAYEIFEKKRQREIEEWHAKQIASGEAKDNANFQ
PLGGDWRERVKRRRAQAAKAAALTPSEAPTDENKQPDLEELSKGLPSGWQVYWDGSSKQVYYGNVITSETTWTRPPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13225 WW domain-containing protein (... Potri.001G371600
[exp]
0 1
AT1G09730 Cysteine proteinases superfami... Potri.002G105700
[exp]
2.82 0.8376
AT1G63500 Protein kinase protein with te... Potri.001G104700
[exp]
5.91 0.8168
AT3G06670 binding (.1.2) Potri.010G142200
[exp]
7.07 0.8384
AT2G39340 AtSAC3A yeast Sac3 homolog A, SAC3/GAN... Potri.010G213700
[exp]
7.93 0.8317
AT4G19440 Tetratricopeptide repeat (TPR)... Potri.003G105700
[exp]
17.66 0.8165
AT4G32850 PAP(IV), PAP(IV... poly\(A\) polymerase IV, poly\... Potri.006G235400
[exp]
18.97 0.7969
AT1G77800 PHD finger family protein (.1.... Potri.002G089400
[exp]
20.19 0.8261
AT2G39340 AtSAC3A yeast Sac3 homolog A, SAC3/GAN... Potri.008G047700
[exp]
21.21 0.8193
AT5G60410 ATSIZ1, SIZ1 DNA-binding protein with MIZ/S... Potri.010G219600
[exp]
21.44 0.8203
AT5G23150 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP... Potri.007G071600
[exp]
25.69 0.8122

Potri.001G371600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.