Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05390 635 / 0 ATRFNR1 root FNR 1 (.1.2) AT1G30510 610 / 0 ATRFNR2 root FNR 2 (.1.2.3) AT5G66190 299 / 2e-99 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 298 / 7e-99 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT4G30210 72 / 2e-13 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 66 / 2e-11 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G02280 57 / 1e-08 Flavodoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112900 [exp] 296 / 2e-98 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.007G057200 [exp] 291 / 2e-96 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.002G106566 [exp] 71 / 8e-14 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.005G153800 [exp] 71 / 3e-13 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 67 / 5e-12 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.018G092100 [exp] 64 / 7e-11 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.004G101100 [exp] 59 / 3e-09 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038538 [exp] 641 / 0 AT4G05390 624 / 0.0 root FNR 1 (.1.2) Lus10023266 [exp] 569 / 0 AT4G05390 569 / 0.0 root FNR 1 (.1.2) Lus10028451 [exp] 297 / 1e-98 AT5G66190 596 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10041904 [exp] 293 / 1e-96 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10025485 [exp] 73 / 8e-14 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 72 / 3e-13 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 70 / 8e-13 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 62 / 3e-10 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10017589 [exp] 53 / 3e-07 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10032842 [exp] 48 / 1e-05 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G371900.1 pacid=42791031 polypeptide=Potri.001G371900.1.p locus=Potri.001G371900 ID=Potri.001G371900.1.v4.1 annot-version=v4.1 ATGGCTCATTTGGCTGCACTTTCTCAGGTTTCCTTTGCTGTTCCTGCTGGGAGCGATACCACCCTAAGGAGATCTGCTTTTAAGATTCAAAATATAAGCG TTGGTGATAAATCATGGCACCCTGCCTCATCTTTGGATTTGAAATCAAGGAATACTGGGTTGAAAAAACGATTGTTGGTATGCATGTCTGTGCAACAAGC CAGTAGATCTAAGGTTGCAGTTTCACCTTTAGGACTTGAAGATGCCAAGGAACCCCCATTGAATACATACAAGCCCAAGGAACCTTACACAGCAACAATT GTCTCTGTAGAGAGGATTGTCGGCCCAAACGCTCCTGGAGAGACTTGCCATGTAGTGATTGATCATGGTGGTAATGTTCCCTACTGGGAAGGACAGAGTT ATGGCGTAATACCCCCTGGTGAAAACCCGAAGAAACCAGGGGCCCCCCACAACGTACGTCTATATTCAATAGCATCTACCAGGTATGGAGATTCTTTTGA TGGCAAGACTGCTAGTTTATGTGTCCGCCGTGCTGTCTATTATGACCCTGAGACTGGAAAGGAGGATCCTTCGAAGAGTGGAGTGTGCAGCAATTTCCTC TGCAACTCAAAGCCTGGAGACAAAGTTCAGATCACTGGACCTTCTGGCAAGATAATGCTTTTACCTGAGGATGACCCAAATGCCACCCACATAATGATTG CTACGGGCACTGGTGTAGCTCCATTTAGAGGTTATCTCCGGCGCATGTTTATGGAGGCTGTCCCAACATACAAGTTTGGTGGTCTTGCGTGGCTTTTCCT TGGGGTGGCCAACAATGACAGTCTCCTCTATGATGAGGAATTTGCCAAATATCTTCAGGATAACCCAGACCATTTCCGGTATGACAAGGCACTCAGTAGA GAACAAAAGAACAAGAGTGGAGGCAAGATGTACGTGCAGGATAAGATTGAGGAATACAGTGATGAGATCTTCAAACGCTTGGATGATGGAGCCCACATAT ATTTCTGTGGACTCAAAGGAATGATGCCTGGGATCCAAGATACGCTGAAGAAAGTTGCGGAACAGAGAGGAGAGAAGTGGGATGAAAAGCTCTCACAGCT TAAAAAGAAAAAACAATGGCATGTTGAAGTGTACTGA
AA sequence Show only first row Show all	>Potri.001G371900.1 pacid=42791031 polypeptide=Potri.001G371900.1.p locus=Potri.001G371900 ID=Potri.001G371900.1.v4.1 annot-version=v4.1 MAHLAALSQVSFAVPAGSDTTLRRSAFKIQNISVGDKSWHPASSLDLKSRNTGLKKRLLVCMSVQQASRSKVAVSPLGLEDAKEPPLNTYKPKEPYTATI VSVERIVGPNAPGETCHVVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPETGKEDPSKSGVCSNFL CNSKPGDKVQITGPSGKIMLLPEDDPNATHIMIATGTGVAPFRGYLRRMFMEAVPTYKFGGLAWLFLGVANNDSLLYDEEFAKYLQDNPDHFRYDKALSR EQKNKSGGKMYVQDKIEEYSDEIFKRLDDGAHIYFCGLKGMMPGIQDTLKKVAEQRGEKWDEKLSQLKKKKQWHVEVY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Potri.001G371900 [exp]	0	1
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	4.89	0.8356	SHL1.1
AT1G52343			unknown protein		Potri.003G055200 [exp]	10.67	0.8247
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Potri.016G004200 [exp]	11.18	0.8131
AT1G30910			Molybdenum cofactor sulfurase ...		Potri.003G154900 [exp]	12.32	0.8240
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.018G005800 [exp]	14.69	0.7832
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.004G202500 [exp]	16.79	0.8126
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G016400 [exp]	17.60	0.7535
AT2G30270			Protein of unknown function (D...		Potri.019G126300 [exp]	18.97	0.7538
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.003G118300 [exp]	19.18	0.8015
					Potri.003G137900 [exp]	24.10	0.8093

Compare expression of checked genes

Potri.001G371900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.