Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PHB.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34710 1358 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1320 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 1149 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G52150 1135 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1088 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT4G04890 68 / 2e-11 HD PDF2 protodermal factor 2 (.1) AT4G21750 67 / 4e-11 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 66 / 8e-11 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT1G05230 65 / 2e-10 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 64 / 4e-10 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098300 [exp] 1572 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 1175 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G188800 [exp] 1158 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1157 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.004G211300 [exp] 1149 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.006G237500 [exp] 1146 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1145 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.011G025000 [exp] 78 / 2e-14 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G074800 [exp] 77 / 2e-14 AT1G73360 640 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023357 [exp] 1400 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1386 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10000719 [exp] 1166 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10021470 [exp] 1158 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10037568 [exp] 1139 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011426 [exp] 1060 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10011616 [exp] 1054 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10002037 [exp] 824 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10006765 [exp] 88 / 2e-17 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 67 / 5e-11 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0183 [poplar] [flax] PAS_Fold PF08670 [poplar] [flax] MEKHLA MEKHLA domain
Representative CDS sequence Show only first row Show all	>Potri.001G372300.1 pacid=42791970 polypeptide=Potri.001G372300.1.p locus=Potri.001G372300 ID=Potri.001G372300.1.v4.1 annot-version=v4.1 ATGGCGCTTTCTATACACAGTAAGGACAAGCACATGGATTCAAGTAAGTATGTGAGGTATACACCTGAGCAAGTTGAGGCATTGGAGAGGGTGTATACAG AATGTCCTAAGCCTAGTTCTTTGAGAAGACAACAACTTATTAGAGAGTGTCCTATTCTCTCTAACATTGAGCCCAAACAGATCAAAGTCTGGTTTCAAAA CCGCAGATGTCGTGAAAAACAGAGAAAGGAAGCTTCTCGTCTCCAGACAGTGAATAGAAAGCTGACTGCCATGAACAAACTGTTGATGGAAGAGAATGAC CGTTTGCAGAAGCAAGTCTCCCATTTGGTTTATGAAAATGGGTTCATGCGCCAACAAATTCAGACCGCTTCGGCAACGACCACAGACAATAGCTGTGAGT CTGTGGTCATGAGTGGTCAGCACCAACAACAGCAAAACCCAACACCTCAGCAACCCCAAAGGGATGCTAACAACCCAGCTGGTCTTCTCGCAATAGCTGA GGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGTATGAAGCCTGGTCCGGATTCTATTGGAATTGTT GCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACAAAGGTTGCTGAAATCCTCAAAGATCGTCCATCTT GGTTTCGCGACTGCCGTTGCCTTGACATATTGAGTGTGATTCCTACAGGAAGTGGAGGGACAATTGAGCTGATATACATGCAGACTTACGCACCAACAAC ATTGGCTGCAGCACGTGACTTTTGGACACTAAGATATACTACAACCTTGGAAGATGGAAGTCTTGTTATATGTGAGAGGTCATTGACTTCTTCTACTGGT GGCCCAACAGGACCTCCTCCTTCAAGCTTCATAAGAGCTGAAATGCTTCCCAGTGGCTATCTAATTCGACCATGTGAGGGCAGTGGCTCCATCATTCACA TTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTGAGGCCACTTTATGAATCATCCAAAATTCTTGCTCAGAAAATGACCATGGCGGC CTTGCGGCACATAAGACAAATTGCTCAAGAGACTAGTGGGGAAATTCAGTATGGAGGGGGCCGCCAGCCTGCTGTTCTAAGGACATTTAGTCAGAGGCTC TGCAGGGGGTTCAATGATGCTGTGAATGGGTTCACAGATGATGGTTGGTCACTTCTGGGCAGTGATGGTGGGGATGATGTGACCATTGTCATAAATTCAT CTCCAAATAAATTTCTAGGATCTCAATACAATGCATCTATGTTTCCTACATTTGGAGGAGGGGTGCTGTGCGCGAAGGCATCGATGTTGCTGCAGAATGT TCCTCCTGCTTTGCTTGTTCGTTTTTTGAGAGAACATCGTTCTGAGTGGGCTGACTACGGGGTTGATGCCTACTCTGCTGCATGTCTTAAAGCAAGTCCT TATGCAGTTCCTTGTGCCAGACCTGGTGGCTTCCCTAGTAGCCAGGTCATTTTACCTCTTGCGCATACCATGGAGCATGAGGAGTTCTTGGAGGTAGTTC GGCTGGAGGGTCATGCATTCTCCCCAGAAGATGTAGCATTGGCTCGGGATATGTACTTGTTGCAGCTATGCAGTGGAGTTGATGAAAATGCTGTTGGTGC TTGTGCTCAGCTTGTCTTTGCGCCTATTGATGAATCCTTTGCTGATGATGCACCATTGCTGTCATCTGGATTTCGTGTCATACCTTTGGATCCTAAAACA GATGCACCTGCTACGACTCGCACTTTAGATTTAGCCTCTACACTTGAAGTAGGACCTGGTGGCACACGTCCAGCTAGTGAGGCTGACACCAACAGTTATA ACCTTAGGTCAGTCCTGACAATCGCGTTCCAATTTTCATTTGAGAACCACATGCGAGACAATGTGGCTGCTATGGCTCGCCAATATGTTCGTGGTGTTGT GGGGTCTGTTCAGAGGGTTGCAATGGCAATTGCTCCTTCCAGGCTCAGCTCCAATGTGGGGCCAAAGACCCTTCCTGGCTCTCCTGAGGCTCTTACTTTG GCACAATGGATATGCCGAAGCTACAGGATCCATACTGGAGGAGAACTATTTCGGGTTGACTCCCAAGCTGGCGATGCTTTGCTGAAGCAGCTGTGGCACC ATTCAGATGCAATTATGTGCTGCTCCTTGAAAACAAATGCATCTCCAGTTTTCACTTTTGCAAACCAGGCCGGACTTGATATGCTTGAAACTACTCTTGT GGCCCTTCAAGATATTATGCTTGACAAGATCCTTGATGAAGCAGGACGGAAGATTCTCTGCTCTGAGTTCTCTAAGATAACGCAACAGGGATTTGCTTAT CTGCCAGCCGGAATATGTGTATCCAGCATGGGGAGGCCAGTCTCCTACGAGCAGGCGGTTGCATGGAAAGTTCTCAATGATGATGATTCCAACCACTGCC TGGCCTTCATGTTCATGAACTGGTCCTTTGTCTAA
AA sequence Show only first row Show all	>Potri.001G372300.1 pacid=42791970 polypeptide=Potri.001G372300.1.p locus=Potri.001G372300 ID=Potri.001G372300.1.v4.1 annot-version=v4.1 MALSIHSKDKHMDSSKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEEND RLQKQVSHLVYENGFMRQQIQTASATTTDNSCESVVMSGQHQQQQNPTPQQPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIV AVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWFRDCRCLDILSVIPTGSGGTIELIYMQTYAPTTLAAARDFWTLRYTTTLEDGSLVICERSLTSSTG GPTGPPPSSFIRAEMLPSGYLIRPCEGSGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTMAALRHIRQIAQETSGEIQYGGGRQPAVLRTFSQRL CRGFNDAVNGFTDDGWSLLGSDGGDDVTIVINSSPNKFLGSQYNASMFPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASP YAVPCARPGGFPSSQVILPLAHTMEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLSSGFRVIPLDPKT DAPATTRTLDLASTLEVGPGGTRPASEADTNSYNLRSVLTIAFQFSFENHMRDNVAAMARQYVRGVVGSVQRVAMAIAPSRLSSNVGPKTLPGSPEALTL AQWICRSYRIHTGGELFRVDSQAGDALLKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKITQQGFAY LPAGICVSSMGRPVSYEQAVAWKVLNDDDSNHCLAFMFMNWSFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.001G372300 [exp]	0	1	PHB.2
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.006G237500 [exp]	1.00	0.9062	Pt-HB1.6
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	4.89	0.8900
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	5.29	0.8945	Pt-VPS33.2
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	5.74	0.8608	Pt-PHB.1
AT3G24460			Serinc-domain containing serin...		Potri.018G076000 [exp]	6.63	0.8749
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	7.74	0.8648
AT1G67420			Zn-dependent exopeptidases sup...		Potri.008G175400 [exp]	10.72	0.8866
AT2G30700			unknown protein		Potri.007G133800 [exp]	11.31	0.8610
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	13.19	0.8910
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Potri.009G025300 [exp]	13.63	0.8615

Compare expression of checked genes

Potri.001G372300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.