Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45880 84 / 2e-18 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 81 / 2e-17 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT1G78700 61 / 9e-11 BZR BEH4 BES1/BZR1 homolog 4 (.1) AT4G36780 59 / 2e-10 BZR BEH2 BES1/BZR1 homolog 2 (.1) AT1G19350 58 / 9e-10 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein AT3G50750 57 / 1e-09 BZR BEH1 BES1/BZR1 homolog 1 (.1) AT1G75080 57 / 1e-09 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) AT4G18890 53 / 4e-08 BZR BEH3 BES1/BZR1 homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159300 [exp] 84 / 3e-18 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 83 / 3e-18 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.003G106500 [exp] 82 / 9e-18 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.016G125700 [exp] 67 / 7e-14 AT1G19350 82 / 1e-18 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein Potri.014G041600 [exp] 60 / 2e-10 AT1G75080 349 / 2e-120 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.002G133700 [exp] 60 / 2e-10 AT1G75080 326 / 2e-111 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.005G126400 [exp] 59 / 5e-10 AT1G75080 269 / 1e-88 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.003G026600 [exp] 59 / 5e-10 AT1G78700 341 / 4e-117 BES1/BZR1 homolog 4 (.1) Potri.001G386900 [exp] 59 / 5e-10 AT1G78700 340 / 7e-117 BES1/BZR1 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018842 [exp] 84 / 3e-18 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10035679 [exp] 82 / 6e-18 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10017819 [exp] 78 / 9e-18 AT2G45880 166 / 2e-48 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10014327 [exp] 58 / 1e-09 AT1G75080 309 / 1e-104 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10010795 [exp] 58 / 1e-09 AT1G75080 332 / 2e-113 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10026036 [exp] 58 / 1e-09 AT1G75080 303 / 2e-102 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10016307 [exp] 58 / 1e-09 AT1G75080 392 / 5e-137 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10005419 [exp] 55 / 9e-09 AT1G78700 348 / 9e-120 BES1/BZR1 homolog 4 (.1) Lus10015238 [exp] 55 / 9e-09 AT1G78700 347 / 3e-119 BES1/BZR1 homolog 4 (.1) Lus10007319 [exp] 55 / 1e-08 AT1G78700 310 / 2e-104 BES1/BZR1 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [poplar] [flax] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G372500.1 pacid=42790403 polypeptide=Potri.001G372500.1.p locus=Potri.001G372500 ID=Potri.001G372500.1.v4.1 annot-version=v4.1 ATGAAGAGGGATGGTTCATCAACATCATCATCATCAGGCAGGAGTGAGAGTGATAAGGAGAGAACAAAACTGAGAGAGAGACAGAGAAGAGCTATTACCA CCAGGATCTTCCATGGACTCAGGAAATATGGTGGTTACCAGCTTTCACCACGCTCTGATATCAATCAAGTCCTCCGTGAACTCGCCAAGGAGGCTGGTTG GGTTGTTGAGCCTGATGGCACCACCTACCGCTATAAGGTTGTGAGCCGGTGCCCAACTTGTGGGGTGATCCCAAATACAAGCACCAACACGACACCTACC ACCAGCAGCACCGTCATTGCTTGTGGCGGTGGTGGTGGAGGAGGAGGAGGAGACTGCTCTCCAACCACGTCGCCGCGCTGCAATATCGACCCCACAATGA TCAACCCCTACAACAACAACAGCCATGCTGGGTCTACATCCTTGTATGGTCATGAACATGGCTCTGCAGGTGGTTGTACCGGTGATGTTGACAATAATAA TTCTCTTGCTTTCTACATGTACAATGGACTAGCTAGTGGGCTCCACCACCCATCCACAGCCACAGCCACAGCCGCGGCCGCCATCATCGGAGGTGGAATG AAGGTGCAGGTACCAAGTCAGCAGCAGCTTCAAGGGACGTACATCCAAGAGGCAAGGGCATCTAACCAGAACACGCCTGTGGGATCACTAGACCAGTAA
AA sequence Show only first row Show all	>Potri.001G372500.1 pacid=42790403 polypeptide=Potri.001G372500.1.p locus=Potri.001G372500 ID=Potri.001G372500.1.v4.1 annot-version=v4.1 MKRDGSSTSSSSGRSESDKERTKLRERQRRAITTRIFHGLRKYGGYQLSPRSDINQVLRELAKEAGWVVEPDGTTYRYKVVSRCPTCGVIPNTSTNTTPT TSSTVIACGGGGGGGGGDCSPTTSPRCNIDPTMINPYNNNSHAGSTSLYGHEHGSAGGCTGDVDNNNSLAFYMYNGLASGLHHPSTATATAAAAIIGGGM KVQVPSQQQLQGTYIQEARASNQNTPVGSLDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.001G372500 [exp]	0	1
AT5G54850			unknown protein		Potri.001G421000 [exp]	8.48	0.8298
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	9.53	0.8079
AT3G01435			Expressed protein (.1)		Potri.004G001600 [exp]	10.48	0.8240
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.019G125400 [exp]	12.36	0.7982
AT3G46630			Protein of unknown function (D...		Potri.014G023200 [exp]	12.64	0.7996
AT5G52545			unknown protein		Potri.004G079400 [exp]	12.72	0.8280
AT5G13340			unknown protein		Potri.019G001900 [exp]	13.41	0.8133
					Potri.001G247000 [exp]	13.78	0.8524
AT3G25590			unknown protein		Potri.010G133600 [exp]	15.00	0.7065
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.011G146600 [exp]	16.49	0.7521	ARRO.1

Compare expression of checked genes

Potri.001G372500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.