Plant FIBer expression Database

Potri.001G372600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30480 327 / 4e-110 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G098100
[exp]
397 / 4e-138 AT1G30480 348 / 1e-118 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Potri.011G050400
[exp]
47 / 1e-05 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Potri.004G040900
[exp]
47 / 2e-05 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Potri.007G028500
[exp]
42 / 0.0004 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023355
[exp]
372 / 8e-128 AT1G30480 470 / 3e-166 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Lus10038451
[exp]
357 / 5e-122 AT1G30480 455 / 6e-160 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0449 G-PATCH PF01585 G-patch G-patch domain
Representative CDS sequence
>Potri.001G372600.1 pacid=42790036 polypeptide=Potri.001G372600.1.p locus=Potri.001G372600 ID=Potri.001G372600.1.v4.1 annot-version=v4.1
ATGTTTGGTGGTGGATTATATGGAGATCTGCCTCCACCATCCGCCACGGCGGTGGAAGAAAAATCAACTACCAACACCTCCACTGTATGGTCTTCTACTA
CCTTGATGGCCCCACCTACTCTCCGTAAACCCATCACATCACCACTAACTATTTTAAAAAACCCTAACAAACCTAAACCCCAAATCTCTGCTTCCAAATC
TTTAGTTTCTCCGCTCGTGGCGGCGGCGACTGTGCTACCCGATGAGGTGACTCCGCAACCGGAACTGGTAGGGGTGAATTCGGTGGTTGTTGAGGAGTAT
GATCCGGCCAGGCCGAATGATTATGAAGATTATAGGAGGGAGAAAAAAAGGAAGGCGATGGAAGCGGAGAGGTTGAGGGAGATTGAGAGGAGGAGGCAAG
AGGAGGAGGAGGAGGAGAGGGAGAGGGAGAGGGAGAAGGATAGGGAGAGGGATGTGAATATTTCTGGGGAGGAAGCGTGGAGAAGGCGTGCTGCCATGAG
TGGAGGTGTTCCGAGGAGTTCTTCGCCACCCAGGAATGGGGATGGGTTTAGTATTGGGACGTCAGGGACGGTGGGGTTGGGAGTTGGTGCTGGTGGACAA
ATGACTGCGGCGCAGAGGATGATGGCGAAGATGGGGTGGAAGGAAGGGCAAGGATTGGGGAAACAGGAGCAAGGGATTACGACGCCATTGATGGCGAAGA
AGACTGATAGGAGAGCTGGGGTTATAGTGAATGCTAGCGAGAAGAAGGTGAAGAGTGTGAATTTCAATGGAACTCCTCCAACTCGGGTTTTGCTCCTTAG
GAATATGGTGGGCCCTGGTGAGGTAGATGATGAACTAGAAGACGAGGTTGGATCCGAGTGTGCGAAGTATGGGACAGTCACTAGGGTTCTTATATTTGAG
ATCACCGAACCAAACTTTCCTCGTGAAGAGGCAGTTAGAATCTTTGTACAGTTTGAGAGATCAGAAGAAACAACAAAAGCATTGATTGATCTCGATGGGC
GGTTTTTTGGGGGTAATGTGGTTCGTGCAAGGTTCTTCGATGAGGAGAAGTTCAGCAACAACGAGCTGGCTCCTGTGCCTGGTGAAATCCCTGGGTTTTG
A
AA sequence
>Potri.001G372600.1 pacid=42790036 polypeptide=Potri.001G372600.1.p locus=Potri.001G372600 ID=Potri.001G372600.1.v4.1 annot-version=v4.1
MFGGGLYGDLPPPSATAVEEKSTTNTSTVWSSTTLMAPPTLRKPITSPLTILKNPNKPKPQISASKSLVSPLVAAATVLPDEVTPQPELVGVNSVVVEEY
DPARPNDYEDYRREKKRKAMEAERLREIERRRQEEEEEEREREREKDRERDVNISGEEAWRRRAAMSGGVPRSSSPPRNGDGFSIGTSGTVGLGVGAGGQ
MTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASEKKVKSVNFNGTPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFE
ITEPNFPREEAVRIFVQFERSEETTKALIDLDGRFFGGNVVRARFFDEEKFSNNELAPVPGEIPGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30480 DRT111 DNA-DAMAGE-REPAIR/TOLERATION P... Potri.001G372600
[exp]
0 1
AT1G06790 RNA polymerase Rpb7 N-terminal... Potri.002G044500
[exp]
1.41 0.7116
AT4G11560 bromo-adjacent homology (BAH) ... Potri.001G104300
[exp]
3.46 0.7729
AT5G12100 pentatricopeptide (PPR) repeat... Potri.010G249800
[exp]
11.61 0.6624
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.005G124700
[exp]
14.17 0.6875
AT5G03780 TRFL10 TRF-like 10 (.1) Potri.002G005600
[exp]
22.36 0.6817
AT3G50670 U1SNRNP, U1-70K U1 small nuclear ribonucleopro... Potri.007G026900
[exp]
23.45 0.6592
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.007G027500
[exp]
29.39 0.6670
AT1G08315 ARM repeat superfamily protein... Potri.001G028300
[exp]
30.46 0.6109
AT2G44430 DNA-binding bromodomain-contai... Potri.001G229300
[exp]
30.57 0.6583
AT4G15880 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cystein... Potri.008G221500
[exp]
32.86 0.6566 Pt-ESD4.1

Potri.001G372600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.