Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15115 115 / 4e-29 unknown protein AT1G53180 72 / 1e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129800 [exp] 50 / 1e-06 AT2G42760 65 / 4e-12 unknown protein Potri.004G059900 [exp] 42 / 0.0004 AT2G42760 99 / 6e-25 unknown protein Potri.011G069900 [exp] 41 / 0.0005 AT2G42760 89 / 4e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013678 [exp] 82 / 2e-17 AT3G15115 50 / 9e-07 unknown protein Lus10017937 [exp] 71 / 2e-13 ND 42 / 4e-04
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G372800.1 pacid=42788150 polypeptide=Potri.001G372800.1.p locus=Potri.001G372800 ID=Potri.001G372800.1.v4.1 annot-version=v4.1 ATGGATAATTGTTTTGATGATGACTCTCTTGAGCCTTTATCATCAACTAGTACAAGATCAGGTGGTGATAATGAAGTGAAAGCTGCAGTTCATCAACTTT TGGAAGAGGGTTGGTTCTTTGGCAAATTGCTGGACGTCAACAGCAAACCAAGAATGCTCAGGTGCTATTCTGATCCTTCTCCGAGCTTCGATCAACAGAT TTTAGCAAATAATTGTCCTCCGAGTGGAAAATCTTCATCCACAAGAGAATTACTCCCTCCTGGTAATTTGACTCGTGCACCGTCCTTACCGCCTAATATA GGGAGATCAGAAGAGAAAATACAAGAAACAGAGAGCAATACTAGTGCTAGTGGAATGAGCAGAAAATTGACTAGGCAATTATCAGATCAAGTTTTGATTC GAAAACCAAGTTGTGTGAAAAAGAAAGAAGGAATAAGCCAAGTGAAAGTAGCAAGTCATGCTAATAGAAATAGGAGGAGCAAAATGGTGGCGGAGGGGCA ATCATCACAGCACAGCTTGATAAGAACACCATCTTTGCCACCTTATATAGGGAGGGAAGAAATGAATGAAGAGAGTGAAAGCGATGAAATTACGATGAGC AAATTGATTCGGCAAGCAATGCCTCTCTCTAAGGATATCTTGCCTCGGCAACGTAGCTCTAAGATGATCTTGCCGAAGTACAGACCACCAAGAAACTCAG AGGAGGAAAGAGGTGATGCATTGCAGGATATTGCCTCTGAAACAAGTAGGTTTCCTAAAAATCAAGGGAGATTAGAGAAGAGCCTGAGCAATCTTGAATC TCATGAAGTGCAAGGGTTTAAGGACAAAAGGGGCTTCAATCCACCAAGTATGGTTGAGATATTTGCCGGTTTGCAAGAGAAGAGAATATATATAAAGCGA AATCAAGACAAGGTGAGGGAACCTTATCCCTCAAGTTCATGGCAAGTGAACAGTTGCGCCTGTGCTCCTCCGATCCCAGTTTGGGCTTCCAAAGACTCCG CACAGGATATGAAGGCGCAACTCAAGTTTTGGGCCCGATCTGTGGCATCTAACGTGCGCTAG
AA sequence Show only first row Show all	>Potri.001G372800.1 pacid=42788150 polypeptide=Potri.001G372800.1.p locus=Potri.001G372800 ID=Potri.001G372800.1.v4.1 annot-version=v4.1 MDNCFDDDSLEPLSSTSTRSGGDNEVKAAVHQLLEEGWFFGKLLDVNSKPRMLRCYSDPSPSFDQQILANNCPPSGKSSSTRELLPPGNLTRAPSLPPNI GRSEEKIQETESNTSASGMSRKLTRQLSDQVLIRKPSCVKKKEGISQVKVASHANRNRRSKMVAEGQSSQHSLIRTPSLPPYIGREEMNEESESDEITMS KLIRQAMPLSKDILPRQRSSKMILPKYRPPRNSEEERGDALQDIASETSRFPKNQGRLEKSLSNLESHEVQGFKDKRGFNPPSMVEIFAGLQEKRIYIKR NQDKVREPYPSSSWQVNSCACAPPIPVWASKDSAQDMKAQLKFWARSVASNVR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15115			unknown protein		Potri.001G372800 [exp]	0	1
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	3.16	0.6992
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.009G138400 [exp]	5.91	0.6784
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.008G213500 [exp]	9.32	0.6976
AT1G45688			unknown protein		Potri.014G026800 [exp]	11.04	0.7292
AT5G58360	OFP	ATOFP3, OFP3	ARABIDOPSIS THALIANA OVATE FAM...		Potri.004G003700 [exp]	14.96	0.6023
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	15.36	0.6893
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G090300 [exp]	16.73	0.6372
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G035100 [exp]	26.83	0.6793
					Potri.003G212150 [exp]	30.75	0.6139
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.018G100400 [exp]	41.15	0.6544	GAE1.1

Compare expression of checked genes

Potri.001G372800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.