Plant FIBer expression Database

Potri.001G372850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15110 52 / 6e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G097800
[exp]
73 / 2e-16 AT3G15110 239 / 1e-78 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009195
[exp]
61 / 8e-12 AT3G15110 219 / 2e-70 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G372850.1 pacid=42790001 polypeptide=Potri.001G372850.1.p locus=Potri.001G372850 ID=Potri.001G372850.1.v4.1 annot-version=v4.1
ATGGAGAAAAGAAAAATTCTTGCTCTGCCCTTATATATATATTGTTCACCAATTCAGGTTGTTACTAGTGTTCTTCTCACTGGTGCCTTCTCTGTTTCCT
CTTCCGCTCTCTTCGACGCCGTGCTAAGCATTCTAAAGAAATGGGCTATTCTGAATGGTTTGTGCTACCTTGCAACATTTTTTCTTGGAATCAATTCTGT
TGGTTTGTTCCTTTATTCTGCCAGGCTTGCTTTCAACTCTTTAATGGAAGGCGATACTGACAAAGAAAATGAAAGTAAAGTAGTGGTCAGTCAGGTTCAC
CAAATTCAACATCTGATAGTGCTACAGATGGAGCAGAGTTGA
AA sequence
>Potri.001G372850.1 pacid=42790001 polypeptide=Potri.001G372850.1.p locus=Potri.001G372850 ID=Potri.001G372850.1.v4.1 annot-version=v4.1
MEKRKILALPLYIYCSPIQVVTSVLLTGAFSVSSSALFDAVLSILKKWAILNGLCYLATFFLGINSVGLFLYSARLAFNSLMEGDTDKENESKVVVSQVH
QIQHLIVLQMEQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15110 unknown protein Potri.001G372850
[exp]
0 1
AT3G52220 unknown protein Potri.008G019100
[exp]
1.41 0.8906
AT1G04270 RPS15 cytosolic ribosomal protein S1... Potri.005G055401
[exp]
2.00 0.8831
AT5G06810 Mitochondrial transcription te... Potri.016G048400
[exp]
2.44 0.8524
Potri.014G022050
[exp]
2.44 0.8294
AT4G02510 TOC86, TOC160, ... TRANSLOCON AT THE OUTER ENVELO... Potri.008G225000
[exp]
5.29 0.8493
Potri.010G102250
[exp]
7.93 0.8259
AT5G57140 ATPAP28, PAP28 purple acid phosphatase 28 (.1... Potri.006G074500
[exp]
8.71 0.7636
AT2G23090 Uncharacterised protein family... Potri.001G296600
[exp]
10.58 0.7929
AT4G19140 unknown protein Potri.001G130900
[exp]
12.96 0.8195
AT5G08170 ATAIH, EMB1873 EMBRYO DEFECTIVE 1873, AGMATIN... Potri.015G055300
[exp]
14.07 0.8075

Potri.001G372850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.