Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46060 146 / 3e-43 Protein of unknown function, DUF599 (.1) AT5G24600 118 / 2e-32 Protein of unknown function, DUF599 (.1.2) AT3G18215 112 / 5e-30 Protein of unknown function, DUF599 (.1) AT4G31330 89 / 2e-21 Protein of unknown function, DUF599 (.1) AT5G10580 81 / 5e-18 Protein of unknown function, DUF599 (.1.2) AT5G24790 74 / 2e-15 Protein of unknown function, DUF599 (.1) AT5G43180 50 / 5e-07 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059400 [exp] 149 / 2e-44 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.015G001300 [exp] 118 / 2e-32 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 117 / 5e-32 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 87 / 1e-20 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 63 / 1e-11 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005266 [exp] 175 / 2e-54 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 172 / 1e-53 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10013947 [exp] 107 / 1e-27 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 105 / 3e-27 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10005272 [exp] 105 / 9e-27 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 103 / 3e-26 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 100 / 2e-25 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10013944 [exp] 92 / 3e-22 AT5G46060 100 / 3e-31 Protein of unknown function, DUF599 (.1) Lus10000133 [exp] 91 / 7e-22 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10005267 [exp] 91 / 7e-22 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [poplar] [flax] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Potri.001G372900.1 pacid=42789383 polypeptide=Potri.001G372900.1.p locus=Potri.001G372900 ID=Potri.001G372900.1.v4.1 annot-version=v4.1 ATGGCTTGGAGAAAGGAGTGCTTGGACCTCGTACTGGTGCCACTAGGTTTAATGATCATGTCTGGCTACCATCTCTACCTTCTACACAGATGTGTAAGAT CTCCGGAGACCACAGGCATTGGCCACGAAAATCATTACAGAAAGGCTTGGGTTGAGAGAGTATTGCAGGTAGAGGGAAAAGAAAGGGGTTTATATTTAAC AGTAATAGCTAGCACCATAACAGCATCAACTTTCTTGGCATCGACCTCTCTAGCTCTAAGCTCTCTAATCGGAGCATTGGTAGTCAGCTCTTCTCATAAC ATCTTCATAAACAGTGTCGTATATGGTGATACAAGTTCATCAGTCATCACTGTCAAGTATATCTTCCTGCTCATATGTTTCCTAGTGGCTTTTGCTTCTT TTCTTCAATGTGCGAGGTCCTTAGTCTATGCCAACTTCCTTATCAGCATGCCAAATAGTGATATACCAGTGAGTTACGTGCAGAAGGCAGTTATAAGAGG AAGCACTTTTTGGTCTATTGGGTTAAGAGCGATCTACTTTGCCACAAATTTGCTGATGTGGATTTTTGGTCCAATACCCATGTTCGTAACGTCATTGGTT TTGGTGGCGATTTTGAACATTTCTGACACAAATTCAACCCCATTCCATCAGTTTAAATCTGCTAAGAGTCATAGCATGTTCAGGAGGATAAGTGAGGAGG TACATCTGCACTTGCAACAGTAA
AA sequence Show only first row Show all	>Potri.001G372900.1 pacid=42789383 polypeptide=Potri.001G372900.1.p locus=Potri.001G372900 ID=Potri.001G372900.1.v4.1 annot-version=v4.1 MAWRKECLDLVLVPLGLMIMSGYHLYLLHRCVRSPETTGIGHENHYRKAWVERVLQVEGKERGLYLTVIASTITASTFLASTSLALSSLIGALVVSSSHN IFINSVVYGDTSSSVITVKYIFLLICFLVAFASFLQCARSLVYANFLISMPNSDIPVSYVQKAVIRGSTFWSIGLRAIYFATNLLMWIFGPIPMFVTSLV LVAILNISDTNSTPFHQFKSAKSHSMFRRISEEVHLHLQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46060			Protein of unknown function, D...		Potri.001G372900 [exp]	0	1
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	1.73	0.8773
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.005G014600 [exp]	6.63	0.8385
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023800 [exp]	6.92	0.8483
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	11.74	0.8630
					Potri.016G086001 [exp]	16.24	0.7958
AT2G28940			Protein kinase superfamily pro...		Potri.001G240500 [exp]	16.94	0.7341
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G382400 [exp]	19.79	0.8462	Pt-SRG1.2
AT3G14420			Aldolase-type TIM barrel famil...		Potri.004G065200 [exp]	20.00	0.8206
AT2G36470			Plant protein of unknown funct...		Potri.004G098000 [exp]	24.00	0.8320
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.013G019600 [exp]	26.05	0.8438

Compare expression of checked genes

Potri.001G372900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.