Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15095 155 / 2e-39 HCF243 high chlorophyll fluorescence 243, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097700 [exp] 742 / 0 AT3G15095 157 / 4e-40 high chlorophyll fluorescence 243, unknown protein Potri.006G130500 [exp] 47 / 3e-05 AT5G03110 145 / 2e-41 unknown protein Potri.016G086900 [exp] 44 / 0.0003 AT5G03110 120 / 8e-32 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013679 [exp] 222 / 7e-62 AT3G15095 130 / 2e-32 high chlorophyll fluorescence 243, unknown protein Lus10017938 [exp] 195 / 8e-53 AT3G15095 169 / 4e-44 high chlorophyll fluorescence 243, unknown protein Lus10026490 [exp] 47 / 2e-05 AT5G03110 61 / 6e-11 unknown protein Lus10019920 [exp] 47 / 2e-05 AT5G03110 71 / 4e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G373100.1 pacid=42790517 polypeptide=Potri.001G373100.1.p locus=Potri.001G373100 ID=Potri.001G373100.1.v4.1 annot-version=v4.1 ATGGATACATTTGTAGACAGACTCCATCGAAGCAACAGCAACAATAACAGTAGCACTGGTAACAACAACACAATTAGAAGGCTTAGAAGCAATGGCAGCA TGAAAGGTGGCCATGCTTCACCAATGTTCCCTACTAATGGCAAGAAACGTGGCTGTGCTTTTGAAAATCCTGAACCCTCTTCTCCAAAGGTTACTTGCAT TGGTCAAGTGAGAGTAAAGACCAAGAAACAAGGCAATAAACTGAGAACAAGATCAGAGAAGAGAGGGGAGATAAGTTTTAGAAGAGTAGACCAAAACAGC AATGCTTTTGAAGGGAGCAATAATCATCAAGATTTGATTAACAATCAGTTCTTGAATCAGCAGCAGCAACAAGAGGATTTGTCACCCAGGAATCCAAGAT GGGTGCATTTGCCTGTGACTATATGTGAAGCTTTAAGGACTTTTGGAGCTGAGTTTAATTGCTTTTTACCTTGCCGTTCTTCATGCACGGCAAGTGAAAA AGAGAAAGAAGAGAAGGCAGCGGCAGCAGGATCTAATAACAATGGCAGTAGCTCTTGTGGGGCGGTGTTTGCTAGGTGGTTGGTGGCAGTGCAAGAGGAA GAAGGGAAAGGGAGGGAGATAGAGTTGGTGGTTGGAGAAGAAGTCGAAGAGGAAAGAGATGAGAGGAGGAGGAGCTATAGGAGACATGTTTATGAAGAGA TTGAATTTAAAGACGAGAAATTTGGAGGAAATGAGGGTTTGCAAGAAGAGGAAGAAGCAAGGGTAAATATTTGTATACCACCAAAGAATGCTTTGTTGTT GATGAGGTGTAGATCTGATCCTGTTAAAATGGCTGCTCTAGCTAATAAGTTTTGGGAAGCACCTGCTCCACAAGTTGAAGAAGATGAGCAAGAAGATAAT GAAAAGGATAGAAATTTGGGAGTAGAAGAAGAAAAGCGTATCAATGTAGAAGATAAAAGAGAAGTTGGGCCAGGTCATGAAGAGGAAGAGCAAATAAAAG TTGTGCAAGAAAGTATTAGGGAGCACAAGGAGGATTTGTTTGTGGCTGAAAATCTGGTCTCTTTCGAAACTGTTGAAGAGCAGCATACTCAAGAAACTGG AGTAGGTTTGGCTCTTTTGGAAGGCGAAGGTGGAGCAGATAGCCAACAAGTCAGAAGCACAGATGAGAACATCGATGGGGTTCTACAAGAAGGGAGTCCG GTGAAGCAAGAAGAGGAACCAGAAATTCTTGAGGTCATGAACTTGCAGCCAACAGCCACAACACAAGAATCTGTTAGTCTATGCAGTGATCAGTCTTCAC ACGATCAAGAAATTGCAGATCCAGAGGCCTTGATGAATCACGAAAATGAAAACAAGATGGTTAAAGAAAATGAGGATAATCAAGAAGACAGAACACTCGA AGCAGAACAAGAACATGTAGTGGACTTCAGTGATGACATTGAGGAGAATTCAGTGTCTGCACAGTTCGAACAAGAAAGCTTAGAGGTTGCTGTCAAAGAC TTGCAGGACCAAGAACCAGAGCCACGTTCTGTTGCTGAATCACAAGTACAAGAGTCAAAGGAAGAGAAAGAGACCGAGCAAGAGGAGGAAGAACAGACAG TGACCCATGAAAGATCCGAACCCGAAGACCCAAAAACCCAGGAAGCTGGTCAAACGGGTACGGGTGTCAAGTCAAAGAAAAGAGATAGTAGTCAACCACT GTTACCAGATTGCCTGCTGTTAATGATGTGTGAGCCCAAGCTGTCAATGGAGGTATCCAAAGAAACTTGGGTTTGCACTACGGACTTCATCAGATGGTTA CCAGAGCATTCAAGGCCAGTCAATAAAGCGGACGGTAAAGATGAGCCCAAGAAAAGAGCCAGCATCGACAGTAATCCTGCGCAGGTGCATAATAGTAACA GCATCAACAACAACAACAACAACAACTTGCAGCAGCCAGCTAGGTCTTCTTGTTCATATCCGGGTAAGCCGCCGGCTCATGGAGCCGGGACAGAGTCCAT GTCCACAATGATAGAGCAGAAGCTGGTGGGAGCCAGGGCATACGATCCATTTGTTCTGACGCGCTGCAAGTCTGAACCAATGAGGTCAGCTTCTAAGCTT GCCCCGGAGGCTTGTTTCTGGATGAATAGGAAGCTCGAGCCTCATGGAGCAGCGGCTACGCTTGGGGTCGGCGCGGCTGGTGTTGGGTTTTAA
AA sequence Show only first row Show all	>Potri.001G373100.1 pacid=42790517 polypeptide=Potri.001G373100.1.p locus=Potri.001G373100 ID=Potri.001G373100.1.v4.1 annot-version=v4.1 MDTFVDRLHRSNSNNNSSTGNNNTIRRLRSNGSMKGGHASPMFPTNGKKRGCAFENPEPSSPKVTCIGQVRVKTKKQGNKLRTRSEKRGEISFRRVDQNS NAFEGSNNHQDLINNQFLNQQQQQEDLSPRNPRWVHLPVTICEALRTFGAEFNCFLPCRSSCTASEKEKEEKAAAAGSNNNGSSSCGAVFARWLVAVQEE EGKGREIELVVGEEVEEERDERRRSYRRHVYEEIEFKDEKFGGNEGLQEEEEARVNICIPPKNALLLMRCRSDPVKMAALANKFWEAPAPQVEEDEQEDN EKDRNLGVEEEKRINVEDKREVGPGHEEEEQIKVVQESIREHKEDLFVAENLVSFETVEEQHTQETGVGLALLEGEGGADSQQVRSTDENIDGVLQEGSP VKQEEEPEILEVMNLQPTATTQESVSLCSDQSSHDQEIADPEALMNHENENKMVKENEDNQEDRTLEAEQEHVVDFSDDIEENSVSAQFEQESLEVAVKD LQDQEPEPRSVAESQVQESKEEKETEQEEEEQTVTHERSEPEDPKTQEAGQTGTGVKSKKRDSSQPLLPDCLLLMMCEPKLSMEVSKETWVCTTDFIRWL PEHSRPVNKADGKDEPKKRASIDSNPAQVHNSNSINNNNNNNLQQPARSSCSYPGKPPAHGAGTESMSTMIEQKLVGARAYDPFVLTRCKSEPMRSASKL APEACFWMNRKLEPHGAAATLGVGAAGVGF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15095		HCF243	high chlorophyll fluorescence ...		Potri.001G373100 [exp]	0	1
AT5G03670			unknown protein		Potri.006G115300 [exp]	6.00	0.7680
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.006G024600 [exp]	11.22	0.7890	Pt-CDC2.5
AT1G80870			Protein kinase superfamily pro...		Potri.003G183100 [exp]	19.94	0.7921
AT1G80870			Protein kinase superfamily pro...		Potri.001G043700 [exp]	26.83	0.7269
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.001G392601 [exp]	27.03	0.7436
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.006G251900 [exp]	33.49	0.7348	Pt-CESA4.4
AT5G27230			Frigida-like protein (.1)		Potri.005G044100 [exp]	35.28	0.7816
AT3G06330			RING/U-box superfamily protein...		Potri.008G196400 [exp]	37.50	0.6714
AT5G67320		HOS15	high expression of osmotically...		Potri.005G144400 [exp]	39.79	0.7346
AT4G31880			unknown protein		Potri.018G109600 [exp]	40.54	0.7747

Compare expression of checked genes

Potri.001G373100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.