Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18380 369 / 9e-127 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) AT1G15215 153 / 6e-44 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097500 [exp] 533 / 0 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.018G046200 [exp] 166 / 7e-49 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.001G189200 [exp] 149 / 2e-42 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017944 [exp] 425 / 4e-149 AT3G18380 418 / 7e-147 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10013684 [exp] 422 / 1e-147 AT3G18380 416 / 4e-146 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10038276 [exp] 148 / 1e-41 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10014151 [exp] 130 / 1e-34 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10025826 [exp] 119 / 7e-31 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10005480 [exp] 96 / 1e-23 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10037564 [exp] 84 / 1e-18 AT1G15215 130 / 2e-37 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF16719 [poplar] [flax] SAWADEE SAWADEE domain
Representative CDS sequence Show only first row Show all	>Potri.001G373300.1 pacid=42790970 polypeptide=Potri.001G373300.1.p locus=Potri.001G373300 ID=Potri.001G373300.1.v4.1 annot-version=v4.1 ATGGGTCGTCCTCCCAGTAATGGCGGTCCTTCCTTTCGCTTCATGCAGTATGAGGTCACGGAGATGGACGCTATTTTGCAAGAACACCATAACATGATGC CAGCTCGTGAGGTTCTTGTATCTCTTGCAGAGAAGTTCAGTGAGTCTTCAGAGCGAAAAGGGAAGATTCAAGTGCAAATGAAACAAGTTTGGAATTGGTT CCAAAATAGACGGTATGCAATAAGGGCAAAATCAAATAAGGCCCCAATGAAGTTAAATATAACACCTATGCCTCGCGATGATTCAGCTGCTGCGAGGAGT GTGCCTCAACAAGCAGCTGCTCCTATACCTGATGCTGTGCCAGCCACTACATCTGCTTCTTCAGCTGCTGGTGCCAGAAGGGCAACTTCAGAAAACTCTT ATATGGAATTTGAAGCCAAATCTGGTAGAGATGGTGCATGGTATGATGTAGGAACCTTCCAATCCCATAGATACTTGGACAAGGGGGATCCGGAAGTATT GGTTCGGTTTGCTGGTTTTGGACCTGATGAAGATGAGTGGCTTAATGTTTGCAAGCATGTCAGGCAGCGTTCTCTCCCTTGCGAAGCATCGGAATGTGTT GCTGTTCTTCCTGGAGATCTCATACTCTGTTTTCAGGAAGGCAAAGATCAGGCTCTGTATTTTGATGCTCATGTTCTTGATGCACAAAGACGAAGACATG ATGTAAGAGGTTGCCGTTGTAGGTTTTTGGTGCGTTATGATCATGACCAGTCTGAGGAAATTGTGCCACTAAGGAAGATTTGTCGGAGGCCTGAAACTGA TTATAGGCTGCTACAACTTCATGCTGCAAATGACTCAGCAGCTACTGACCAGCAGAAAACTAGTGTAGATCCCTCCATAGCAAGTACCCTGAGGGTTGCT GCTTCTGCCACAGAAACAATGCTGCAGCAGCAACATAACACAGGTGTAGCAGCTCCGGTTTCCCAAGCCAATGTTTCTCAACCTGCCAAAACAATAATTG CGGAGCCAAAAGAGGCTGCAACCCTCAGTGCTGTCGATTCTGGAAATCCTAGTTTCATCTCCACTGCTGTGTTTCCCAGCGTTACGGCTACCGCTGCTGT GTTGGCGAGTGGAATGGCTACGAGTAGCGGCCCTGGTGGCTCTGGAGAGAACATGCAGGGAATTAAATTGTAG
AA sequence Show only first row Show all	>Potri.001G373300.1 pacid=42790970 polypeptide=Potri.001G373300.1.p locus=Potri.001G373300 ID=Potri.001G373300.1.v4.1 annot-version=v4.1 MGRPPSNGGPSFRFMQYEVTEMDAILQEHHNMMPAREVLVSLAEKFSESSERKGKIQVQMKQVWNWFQNRRYAIRAKSNKAPMKLNITPMPRDDSAAARS VPQQAAAPIPDAVPATTSASSAAGARRATSENSYMEFEAKSGRDGAWYDVGTFQSHRYLDKGDPEVLVRFAGFGPDEDEWLNVCKHVRQRSLPCEASECV AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLLQLHAANDSAATDQQKTSVDPSIASTLRVA ASATETMLQQQHNTGVAAPVSQANVSQPAKTIIAEPKEAATLSAVDSGNPSFISTAVFPSVTATAAVLASGMATSSGPGGSGENMQGIKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.001G373300 [exp]	0	1
					Potri.003G083000 [exp]	4.12	0.9305
AT1G49960			Xanthine/uracil permease famil...		Potri.009G086800 [exp]	4.89	0.9287
AT4G36790			Major facilitator superfamily ...		Potri.007G030800 [exp]	5.29	0.9300
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.018G112400 [exp]	5.29	0.9211	Pt-AHA6.3
					Potri.002G193400 [exp]	6.48	0.9025
AT2G24060			Translation initiation factor ...		Potri.006G182000 [exp]	10.00	0.8475
AT5G44670			Domain of unknown function (DU...		Potri.003G156600 [exp]	10.00	0.9093
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	10.39	0.8983	FLA14.5
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.019G077200 [exp]	15.00	0.8728	AGL11.1
AT1G11040			HSP40/DnaJ peptide-binding pro...		Potri.005G179400 [exp]	20.44	0.8652

Compare expression of checked genes

Potri.001G373300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.