Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46030 122 / 2e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097300 [exp] 153 / 2e-50 AT5G46030 146 / 3e-47 unknown protein Potri.014G056000 [exp] 81 / 1e-21 AT5G46030 92 / 1e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015293 [exp] 144 / 2e-43 AT5G46030 154 / 2e-46 unknown protein Lus10025438 [exp] 112 / 8e-34 AT5G46030 127 / 8e-40 unknown protein Lus10014995 [exp] 64 / 1e-14 AT5G46030 74 / 6e-18 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF05129 [poplar] [flax] Elf1 Transcription elongation factor Elf1 like
Representative CDS sequence Show only first row Show all	>Potri.001G373400.6 pacid=42788092 polypeptide=Potri.001G373400.6.p locus=Potri.001G373400 ID=Potri.001G373400.6.v4.1 annot-version=v4.1 ATGGGGAAAAGAAAGTCAAGAGCAAAGCCACCACCAAAGAAGCGGATGGACAAGCTTGATACTGTTTTTAGTTGCCCCTTCTGCAACCATGGTACAAGTG TTGAATGTCGCATTGATATGAAGAACTTGATTGGTGAGGCTGTGTGTGGGATTTGCCAGGAGAACTTCAGCATGACCATCACAGCTTTGACTGAGCCCAT AGACATATATAGCGAATGGATTGATGAATGTGAAAGGGTCAACAGCCTGGAAGATGATGGTGCTTAG
AA sequence Show only first row Show all	>Potri.001G373400.6 pacid=42788092 polypeptide=Potri.001G373400.6.p locus=Potri.001G373400 ID=Potri.001G373400.6.v4.1 annot-version=v4.1 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQENFSMTITALTEPIDIYSEWIDECERVNSLEDDGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46030			unknown protein		Potri.001G373400 [exp]	0	1
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.006G067700 [exp]	2.64	0.8917
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.015G078900 [exp]	4.89	0.8553	PtrcGrx_C1.1
AT3G51500			unknown protein		Potri.011G146400 [exp]	6.00	0.8276
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.016G113500 [exp]	8.48	0.8821	HPT3.1
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.004G156200 [exp]	15.87	0.8624	Pt-RD2.2
AT4G27020			unknown protein		Potri.001G424500 [exp]	16.49	0.8697
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	18.43	0.8665
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.003G126100 [exp]	20.00	0.8217
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Potri.011G138200 [exp]	23.55	0.8458
AT5G03560			Tetratricopeptide repeat (TPR)...		Potri.016G096900 [exp]	25.69	0.8707

Compare expression of checked genes

Potri.001G373400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.