Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G40310 105 / 5e-26 C2H2ZnF Exonuclease family protein (.1) AT3G27970 102 / 3e-25 Exonuclease family protein (.1) AT2G48100 100 / 1e-24 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT5G25800 82 / 1e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 82 / 2e-17 SDN1 small RNA degrading nuclease 1 (.1) AT5G67240 79 / 2e-16 SDN3 small RNA degrading nuclease 3 (.1.2) AT5G05540 76 / 1e-15 SDN2 small RNA degrading nuclease 2 (.1.2) AT3G50090 60 / 4e-10 Exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215700 [exp] 100 / 2e-24 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4) Potri.017G073300 [exp] 96 / 8e-23 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.005G186600 [exp] 81 / 4e-17 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 75 / 4e-15 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000997 [exp] 322 / 6e-111 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011026 [exp] 282 / 8e-96 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008787 [exp] 104 / 1e-25 AT3G27970 583 / 0.0 Exonuclease family protein (.1) Lus10022230 [exp] 101 / 1e-24 AT3G27970 585 / 0.0 Exonuclease family protein (.1) Lus10029642 [exp] 96 / 1e-22 AT2G48100 382 / 3e-132 Exonuclease family protein (.1.2.3.4) Lus10042687 [exp] 88 / 8e-20 AT2G48100 362 / 2e-124 Exonuclease family protein (.1.2.3.4) Lus10028637 [exp] 79 / 2e-16 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018935 [exp] 79 / 2e-16 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042779 [exp] 77 / 1e-15 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019321 [exp] 77 / 1e-15 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF00929 [poplar] [flax] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Potri.001G373500.2 pacid=42792972 polypeptide=Potri.001G373500.2.p locus=Potri.001G373500 ID=Potri.001G373500.2.v4.1 annot-version=v4.1 ATGGGAAGCGAAGAGCAGAAGAAGAAAAACCCCAAGAAGAAGCAAAAGTTACCAATCAACCCCAACTGGGCTCAGCTCCAACAAACGCTACAAATTCATG GCTCTAGGCGTCCAAAAACATCAAATACAGAGACCCAAGATTCTATTTTAGGGAAACGTAAAGAAAGACCTGATGCAGAGTCTGACAAATCTCAGATAAA TCCTCTCATTCCAACCAATGATGACTTCAGCGTTACAGATGCAATAGCCATGGATTGCGAAATGGTTGGTGTTGGTCAAGGAAACAGAAGCGCTCTTGGA CGGGTCACTTTGGTCAATCAATGGGGAAATGTTTTGTATGATGAGTTTGTTCGTCCAGTAGAACGTGTTGCTGACTTCCGTACACAAATTAGTGGCATTC GACCCCGGGACTTAAGGAAAGCAAGGGATTTTTCAACCGCTCAGAAGAAAGTAGCAGTGTTGATCAAAGGAAGGATTCTTGTGGGTCATGCCTTGTCCAA TGATCTTAAGGCATTGCTGTTGGGTCATCCCAAGAAGGACTTGCGGGATACATCAGAATATCAACCATTTCTCAAGGGACGACGCAGGAAGGCACTCCGG CATCTTGCAGCTGAGTTTCTTGGTGCTAAGATCCAGAGTGGAGAACACTGCCCTATAGAGGATGCCCGTGCTGCAATGCTGCTATACCAGAGAAACAAAA AAGAATGGGAGAAGAGTATAAGAGATCAAATGAGACTCAGACAGAAACAGAATAAACGCAACCAAAAAGGGAAAACGAACGAGGGGGGTGCTCTAGATGT CAACCGTGTTGCAATTATATCCTAG
AA sequence Show only first row Show all	>Potri.001G373500.2 pacid=42792972 polypeptide=Potri.001G373500.2.p locus=Potri.001G373500 ID=Potri.001G373500.2.v4.1 annot-version=v4.1 MGSEEQKKKNPKKKQKLPINPNWAQLQQTLQIHGSRRPKTSNTETQDSILGKRKERPDAESDKSQINPLIPTNDDFSVTDAIAMDCEMVGVGQGNRSALG RVTLVNQWGNVLYDEFVRPVERVADFRTQISGIRPRDLRKARDFSTAQKKVAVLIKGRILVGHALSNDLKALLLGHPKKDLRDTSEYQPFLKGRRRKALR HLAAEFLGAKIQSGEHCPIEDARAAMLLYQRNKKEWEKSIRDQMRLRQKQNKRNQKGKTNEGGALDVNRVAIIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15080			Polynucleotidyl transferase, r...		Potri.001G373500 [exp]	0	1
AT5G63630			P-loop containing nucleoside t...		Potri.002G169800 [exp]	3.60	0.8085
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Potri.005G152200 [exp]	6.00	0.7864
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	9.48	0.7493
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	11.31	0.7461
AT3G22660			rRNA processing protein-relate...		Potri.015G131200 [exp]	12.36	0.7258
AT5G58370			P-loop containing nucleoside t...		Potri.019G128000 [exp]	12.36	0.7069
					Potri.005G081700 [exp]	12.64	0.7085
AT2G35030			Pentatricopeptide repeat (PPR)...		Potri.016G038400 [exp]	14.49	0.7095
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	17.32	0.7376
AT1G07470			Transcription factor IIA, alph...		Potri.009G036700 [exp]	21.35	0.6248

Compare expression of checked genes

Potri.001G373500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.