Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2) AT3G15070 351 / 1e-115 RING/U-box superfamily protein (.1.2) AT2G15530 133 / 9e-33 RING/U-box superfamily protein (.1.2.3.4) AT5G42940 130 / 9e-32 RING/U-box superfamily protein (.1) AT4G34040 126 / 2e-30 RING/U-box superfamily protein (.1) AT2G37150 124 / 4e-30 RING/U-box superfamily protein (.1.2.3) AT1G45180 122 / 2e-29 RING/U-box superfamily protein (.1) AT5G24870 119 / 1e-28 RING/U-box superfamily protein (.1.2) AT4G31450 116 / 1e-27 RING/U-box superfamily protein (.1) AT1G73760 113 / 3e-27 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097100 [exp] 972 / 0 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.002G124300 [exp] 132 / 2e-32 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.010G220700 [exp] 125 / 1e-30 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3) Potri.001G304900 [exp] 120 / 3e-28 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 119 / 3e-28 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.008G041201 [exp] 117 / 4e-28 AT2G37150 161 / 1e-43 RING/U-box superfamily protein (.1.2.3) Potri.018G005600 [exp] 116 / 2e-27 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.006G274700 [exp] 114 / 9e-27 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.005G139900 [exp] 107 / 3e-24 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010372 [exp] 139 / 1e-34 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10040389 [exp] 122 / 3e-29 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10024810 [exp] 117 / 2e-27 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10034644 [exp] 101 / 7e-24 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10021722 [exp] 101 / 2e-23 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10023507 [exp] 100 / 5e-22 AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3) Lus10026941 [exp] 97 / 5e-21 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10013497 [exp] 91 / 2e-20 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10042443 [exp] 94 / 6e-20 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10017385 [exp] 91 / 1e-19 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G373700.9 pacid=42788967 polypeptide=Potri.001G373700.9.p locus=Potri.001G373700 ID=Potri.001G373700.9.v4.1 annot-version=v4.1 ATGGGACAAAGAAACATGCTATGCACCAATCAGATGATTGATTTAGAAATGGATCAACAAAGCCAGGGATATCTACATCCTGAGTCCTGCATTCTTCTAG GGGGTGTGACAAACTTCCGACCACCTGATATTCCTACCATGTTAACAGCTTCAGGGAACACTATCAATCGTGACGCCCATCTAGCTGATCGTTATGATGG TGCTATGTTTTATGGGATGCCCCAATACCATGGTGTTCATCCTCATCCTCAGTATCACAGCCCAAATCTTGATTTAAGTGTGGCTACTGCACCCAACTTC TATGTTCCTTACATGACTCCATCTTCTGGTATTCCTATCAGTCATGCATCTTGTGATCAATTATCTTCATCCAACAATTATGGAGTGATTGGAGTTTCTG CTGATGAGTATGGAACAAACAGTCACTTCATGGATAATGCTAGAAGTTCATACAAGAGAAAGAATGCTGAAGGAAATCCAGGGAATTTCCACTATCTGAA TGCCTCAGCAAGCTCTAGTTCCTCAGTTCCCCCAATGAATACAAGGCATCCCGAGGGGGTTGCTCTGATGGATGCTACATCATTCACCCTGCCACATTAC AGGGGGACTAGTGCTTCATCAATCAGGGAAGTAGGATCTCAAAGAAGTGTGAGGAATAGATTAGGTTCTGTGGGGCTCGATCCTGCCTTGACACACAACC CGAACCATTTTATTCAAGGAAACTATTTGGGCCAACCCTATCAGCCAGGTGGCTCTCTCTGGTTAGAACAACACTTAAGCAACGGTTCTACTGATGCAGG CGCTTCAGTATGGACTCAGACCCCTACTATTCCTTACATGCACGGGAACAATGTCAATGGAGTTCCTATAGAAACTGGGAGCATGGGTCCACAGCGGTAT CATGAGCCAGCTAGCAACAGAAGTAATGCCAGTTTCTCGCACCCTTCTCCAGTAAACCCTCAGCACCATAATTTTCATCACCTGTCTCCACCAATTCAAG GAATTAGAGGTCACAATATTAATATTCTTCCTCAAGCACCAGCAGCTTCATTCAGAGTTCCTACAGCCAATGCCTCACAAAGCACTATGAATCTATCTCA AGATGGTTTAGATATTGGACTTAGGAATCCGGGATCTGTTCAACCAACCGGCCTTCGAATGTACCGGCCTCGCCATGAGGGAGTTGCACCTGAGACCACA CTAAGACATCGCAACCTCCCTCGCTTAAGAGTGTTGCCAACAGATGGGGTAGCAATACTAGGGTTCCCTGACTATTATGAAGTAGAGAATTATGCTGACC ACCACAGAGATATGCGCTTGGATATAGAGGACATGTCTTATGAGGAGCTTCTTGCACTTGGGGAGCGTATTGGTAATGTAAATACTGGCTTATCAGATGC AACTATCAGAAGTCAATTAAAAACAAGAACTTATTTATCATCTCCTTATTCAATCAATTTGGAAGTATCTTGTATGGATCAAGAAGCTGATTCTTGCATT ATTTGCCAGGATGATTATAAGAGTAAGGAGAAAATTGCATCTCTTGATTGTGGACACGAGTATCATGCAGATTGCTTGAAGAAGTGGCTACGCTTGAAGA ATGTCTGCCCCATCTGCAAATCTGAAGCCTTAACCATGGAAGGAAAGGATGTTTAA
AA sequence Show only first row Show all	>Potri.001G373700.9 pacid=42788967 polypeptide=Potri.001G373700.9.p locus=Potri.001G373700 ID=Potri.001G373700.9.v4.1 annot-version=v4.1 MGQRNMLCTNQMIDLEMDQQSQGYLHPESCILLGGVTNFRPPDIPTMLTASGNTINRDAHLADRYDGAMFYGMPQYHGVHPHPQYHSPNLDLSVATAPNF YVPYMTPSSGIPISHASCDQLSSSNNYGVIGVSADEYGTNSHFMDNARSSYKRKNAEGNPGNFHYLNASASSSSSVPPMNTRHPEGVALMDATSFTLPHY RGTSASSIREVGSQRSVRNRLGSVGLDPALTHNPNHFIQGNYLGQPYQPGGSLWLEQHLSNGSTDAGASVWTQTPTIPYMHGNNVNGVPIETGSMGPQRY HEPASNRSNASFSHPSPVNPQHHNFHHLSPPIQGIRGHNINILPQAPAASFRVPTANASQSTMNLSQDGLDIGLRNPGSVQPTGLRMYRPRHEGVAPETT LRHRNLPRLRVLPTDGVAILGFPDYYEVENYADHHRDMRLDIEDMSYEELLALGERIGNVNTGLSDATIRSQLKTRTYLSSPYSINLEVSCMDQEADSCI ICQDDYKSKEKIASLDCGHEYHADCLKKWLRLKNVCPICKSEALTMEGKDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53190			RING/U-box superfamily protein...		Potri.001G373700 [exp]	0	1
AT1G54920			unknown protein		Potri.005G034100 [exp]	8.24	0.6454
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Potri.001G472700 [exp]	8.48	0.6613
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	18.73	0.6164
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Potri.006G072900 [exp]	20.59	0.6318
AT1G48790		AMSH1	associated molecule with the S...		Potri.015G045800 [exp]	20.83	0.6142
AT2G29210			splicing factor PWI domain-con...		Potri.001G244600 [exp]	24.31	0.6547
AT1G28260			Telomerase activating protein ...		Potri.011G053800 [exp]	25.98	0.6451
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.001G276800 [exp]	36.33	0.6416
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.014G114900 [exp]	39.38	0.6236
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.011G003500 [exp]	45.74	0.6353

Compare expression of checked genes

Potri.001G373700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.