Plant FIBer expression Database

Potri.001G374100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54080 739 / 0 HGO "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042839
[exp]
768 / 0 AT5G54080 762 / 0.0 "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2)
Lus10028135
[exp]
719 / 0 AT5G54080 708 / 0.0 "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2)
Lus10027840
[exp]
138 / 4e-35 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF04209 HgmA homogentisate 1,2-dioxygenase
Representative CDS sequence
>Potri.001G374100.2 pacid=42792797 polypeptide=Potri.001G374100.2.p locus=Potri.001G374100 ID=Potri.001G374100.2.v4.1 annot-version=v4.1
ATGGAGCAGGAGCAGCAGCAGATCACCATAACCAATGATTTCCCCTCCGACGATCATGATTATCTATCGGGATTCGGCAACACCTTCGAATCCGAATCCA
TCCCTGGATCATTGCCTCGCAGACAGAACAGCCCTCTCTTATGCCCCTACGGTCTCTACGCAGAACAGATCTCCGGCACCTCCTTCACTTCCCCTCACAA
ACTCAACCAACGCAGTTGGTTATATAGAATCAAGCCATCGGTCACTCACGAGCCGTTTCAGGCAAGGTTTCCAAGGCACGATAAACTCGTGAGTGAATTT
GATAAATCAAACAGTTATACAACGCCCACGCAACTGCGGTGGAAGCCAAAGCCAGTAGATACTGTTGAAGAATCAGCACCAATTGATTTTGTTGAGGGCT
TGTATACAGTTTGTGGAGCTGGCAGCTCCTTCCTCCGCCATGGATTTGCTATTCACATGTATACCGCCAATAAATCCATGGATGATCGTGCTTTTTGCAA
TGCCGATGGCGATTTCTTGATTGTTCCACAAAAAGGAAGATTGTGGATCGCTACTGAATGTGGGAAATTGCAAGTCTCTCCTGGTGAAATTGTTGTTATA
CCTCAAGGATTCCGTTTCGCTGTAGATTTGCCAGATGGCCCGTCACGTGGTTATGTGTCTGAGATTTTTGGAACCCATTTTCAACTTCCTGATCTTGGGC
CAATAGGTGCTAATGGTCTTGCTGCTCCAAGGGATTTCCTTGTTCCCAAGGCCTGGTTTGAAGATGGTTCCAGACCAGGATACACTGTCGTTCAAAAGTA
TGGTGGAGAACTTTTTGTTGCAAAACAAGATTTTTCTCCCTTCAATGTGGTTGCTTGGCATGGTAATTATGTTCCATATAAGTATGATCTCAATAAGTTT
TGCCCTTATAATACTGTCTTGTTTGATCACAGTGATCCATCAATAAATACAGTTTTGACTGCACCAACTGATAAACCTGGCGTGGCATTGCTTGATTTTG
TTATTTTTCCTCCCCGATGGCTGGTTGCTGAGCATACGTTCCGACCTCCATACTACCATCGCAATTGTATGAGTGAATTTATGGGCCTGATTTATGGTGG
ATATGAGGCAAAAGCTGACGGCTTTCTCCCAGGAGGTGCAAGCCTTCATAGCTGCATGACTCCACATGGTCCTGATACAAAGACATACGAGGCTACCATT
GAGAGTGGGCATGATGCAGGACCATCCAAAATCACTAATACACTGGCTTTCATGTTTGAATCATGTTTAATTCCCAGGATCAGCCTTTGTGCTCTTAAGT
CACCGTTAATGGATAATGATTACTACCAATGCTGGACTGGACTCAAATCCCATTTTTCCGGCGAAGGAGCAGATAGCAAAGGCAATGGTGTATAG
AA sequence
>Potri.001G374100.2 pacid=42792797 polypeptide=Potri.001G374100.2.p locus=Potri.001G374100 ID=Potri.001G374100.2.v4.1 annot-version=v4.1
MEQEQQQITITNDFPSDDHDYLSGFGNTFESESIPGSLPRRQNSPLLCPYGLYAEQISGTSFTSPHKLNQRSWLYRIKPSVTHEPFQARFPRHDKLVSEF
DKSNSYTTPTQLRWKPKPVDTVEESAPIDFVEGLYTVCGAGSSFLRHGFAIHMYTANKSMDDRAFCNADGDFLIVPQKGRLWIATECGKLQVSPGEIVVI
PQGFRFAVDLPDGPSRGYVSEIFGTHFQLPDLGPIGANGLAAPRDFLVPKAWFEDGSRPGYTVVQKYGGELFVAKQDFSPFNVVAWHGNYVPYKYDLNKF
CPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATI
ESGHDAGPSKITNTLAFMFESCLIPRISLCALKSPLMDNDYYQCWTGLKSHFSGEGADSKGNGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G54080 HGO "homogentisate 1,2-dioxygenase... Potri.001G374100
[exp]
0 1
AT1G04590 EMB2748 unknown protein Potri.016G103000
[exp]
5.83 0.8422
AT2G47350 HIT zinc finger ;PAPA-1-like c... Potri.013G008300
[exp]
5.83 0.8436
AT1G72650 MYB TRFL6 TRF-like 6 (.1.2) Potri.003G063700
[exp]
6.00 0.8232
AT3G21175 GATA GATA24, TIFY2B,... ZIM LIKE 1, GATA TRANSCRIPTION... Potri.002G110800
[exp]
8.48 0.8024
AT5G20030 Plant Tudor-like RNA-binding p... Potri.005G216200
[exp]
9.59 0.8188
AT5G63520 unknown protein Potri.015G098700
[exp]
11.83 0.7958
AT3G59670 unknown protein Potri.005G144800
[exp]
15.16 0.8019
AT2G25640 SPOC domain / Transcription el... Potri.018G125500
[exp]
15.49 0.8112
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.012G021400
[exp]
16.06 0.8088
AT2G31130 unknown protein Potri.019G089900
[exp]
18.76 0.7747

Potri.001G374100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.