Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 423 / 8e-134 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 408 / 3e-128 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 408 / 4e-128 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G11210 385 / 8e-121 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G24720 386 / 5e-120 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 382 / 1e-118 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 370 / 2e-114 ATGLR2.3 glutamate receptor 2.3 (.1) AT4G35290 368 / 2e-113 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 346 / 8e-105 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT5G11180 343 / 4e-104 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G374600 [exp] 983 / 0 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375200 [exp] 968 / 0 AT2G29120 436 / 8e-139 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374700 [exp] 959 / 0 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374800 [exp] 955 / 0 AT2G29120 426 / 6e-135 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375100 [exp] 950 / 0 AT2G29120 419 / 3e-132 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375000 [exp] 948 / 0 AT2G29120 415 / 1e-130 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375133 [exp] 515 / 8e-176 AT5G11210 243 / 3e-72 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.004G052400 [exp] 531 / 5e-175 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 527 / 1e-173 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038670 [exp] 625 / 0 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10026235 [exp] 437 / 2e-138 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 421 / 6e-134 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10013952 [exp] 404 / 3e-127 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 396 / 2e-123 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026553 [exp] 376 / 2e-116 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10027170 [exp] 369 / 8e-114 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10020109 [exp] 367 / 8e-113 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 362 / 7e-112 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039672 [exp] 363 / 8e-112 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.001G374300.2 pacid=42793323 polypeptide=Potri.001G374300.2.p locus=Potri.001G374300 ID=Potri.001G374300.2.v4.1 annot-version=v4.1 ATGGCTACTGTTCATTTTGAGCTCTCGTTAATGGCCGTAGTTTTATTACTAACACCAAGTAGTGGTATAGCAGCTGATCGAAGCAGTGGGACAAAGGGCA ACCAGCAGCATGTTAATGGCGTTGTTGGTGCCATAGTCGACACAAGCTCCCGTATTGGTAAAGAAGAAAGAGTAGCAATGGAGATCGCAAGGGAGGATTT GTATCGTTACTCCAATCAAACTTTGATTCTGCACGTAAAAGACACCGATCAAAGGAAACCCATCCGAGCAGCACTTGCAGGTATGGATCTCATCAACACA CAAGTACAGGCTATTCTAGGACCGCAAACATGGGAAGAGGTGTCATTGATTGCTGATATCTGCACCAAAAACCAAATTCCCATTTTTTCTTTTGCGGACA CAACTCCAGAATGGACAACAGAGAAGTGGCCCTTTCTACTTGGAGCTTCACACGACAATTTTGCACAAATGAAAGCCATTGCTGCTGTTGTACAGTCTTG GAATTGGCATCAGGTAACTGTAATACACGAAGATGTAGGTTCTTGGACGAATGGAGTCATGCCATATCTCCATGATTCCTTAAGAGAAATAGGTGCAGAA GTTAGCCAATTCGTAGGCCTCTCGTCTTTTGCTTCTTCTGATTCATTATCCAGAGAGCTTAAAAATCTTAAAAGAGAGCAGTGTAGAGTCTTTGTTGTTC ATCTGTCATTACCATTGGCCGTGCGTCTATTTGAGATGGCGAAGAAATTGAAAATGATGGAGAAAGACTATGTTTGGATCACTACACATCACATTACAAG CCTTGTCCACTCCATCGATGCCTCTATCATCTCCTCAATGCAAGGAATTGTAGGAGTCAAGAGCTACTTCTCGGAAACAGGAACACGTTTTCAGGATTTT AGTTCAAGATTTCGTAAAAGGTTTAGAAGAGAAAATCCTGAAGAGGAAAACAATGAGCCTGGGATTTATGCAGTGCAGGCCTATGATGCTATCTGGACAA TAGCTCGAGCGTTGAAAGGAAGTAATAGGAGGAATCAAGAATTATTAGAAAAAGTTTTGCAAACTGACTTTCAAGGCCTGTCAGGAAAAGTTCAATTCAA CAATCACAAAATGGCTCCAACACAGATGTTTCAGATCATCAATGTGGTGGGAAAGAGTTATAGGGAACTCGGGTTTTGGTCAAGTGGATTAGGTTTCTCA GAGACTATTGGTAAACATGCTACCTACAGCCCTCTTATGAATGATTTGGAGCAAGTGCTTTGGCCAGGGGGGCCTAGATATACTCCTAGAGGATGGACCG AACTTACAAGAGAGAAGCCACTGTTGGTTGGTGTGCCTGCAAAATCAGGTTACAAAGAGTACGTGAAAGTGGAATACGATCGATCAGGGAATGCTTCTTT CGATGGCCTTGCAATTGAGATCTTCAATGCCACGGTACGACGCTTGCCATTCTATTTGCCATACGAGTTCGTCGCCTTCAATGACATCTCTTACGATAAT CTAGTGGGCCAAATTGGTAAGAAATTTGATGCCGTGGTCGGTGATGTGGCAATAGTGGCTAGCAGATACTCGCATGTGGAGTTCTCACTTCCCTTCTCGG AAACTGGATTGATGCTGGTCGTCCCTGCTCGATCAAGCAATAAAGCATGGTCATTTATCAAACCCTTTACAAAATCCATGTGGGCTTCAATAACCGTCAT AACCATATACAATGGTTTCGTTGTTTGGCTAATTGAGCGACATGCTCATCCTGAATTAAGAGGCTCCATGCTCCATCAAATAGGAATCATGCTTTGGTTA TCTTTCAACACTCTTTTCTCTTTACAAGGTGGAAAACTGCATAGCAATTTGTCAAGGATGTCAGTGGTGGTTTGGTTGTTTGTTGCGCTAGTTGTCATAC AGACATATACAGCCAACCTCACCAGCATGTTGACTGTCCAGAGGCTTGAACCTACCGTAACCAGTGTTGAGGAGCTGCTGAAAAGCAATGCAGCCGTTGG ATACTGTTCAGGTTCATACTTGGAAAATTATCTGGTAGAAGTTTTACGCTTTCCTCGCAACAATGTTAAACATTATGGCTCAGCAGAAGAATATGCTCAA GCCTTCAATAAGAAAGAAATTGCTGCTGCCTTTATTGGAACTCCTTTGGCCAAAATATTCCTTGCAAAATTTTGCAAGAAATTTATTGCAGCTGGGCCAA CATTCAACATCGGAGGGTTTGGATTTGCATTTCCTCGGGGATCTCCATTGCTTGCAAGTATTAATGAAGCTCTACTGAAGGTATCTGAAAATGGAACGCT AGTACAACTGGAGAACAACTTTATTGGCGCACTTCAAAAATGCCAGGACAAGGAAGAAGAAAATCCTAGTCTTAGCCCCAATGGGTTCCGGGCACTCTTC ATAATAACTGTAGGCACATCAACAATTGCTCTAGTAATTTACATTTTTTGTATAGCTAGTTCTTTTTCCGGACTTACAACCATTAGGGGCCTTATGTTCA TTATCATCAAACATTGGTGCTACCAAAGCAAGAGATTCAGCAGAAGAGTAAGCAATGTTGAAAGCCTTGGAAATTCTTCTCCACAGCATGCACCAAACCT GCAGCTCTCTCAAGTTTAA
AA sequence Show only first row Show all	>Potri.001G374300.2 pacid=42793323 polypeptide=Potri.001G374300.2.p locus=Potri.001G374300 ID=Potri.001G374300.2.v4.1 annot-version=v4.1 MATVHFELSLMAVVLLLTPSSGIAADRSSGTKGNQQHVNGVVGAIVDTSSRIGKEERVAMEIAREDLYRYSNQTLILHVKDTDQRKPIRAALAGMDLINT QVQAILGPQTWEEVSLIADICTKNQIPIFSFADTTPEWTTEKWPFLLGASHDNFAQMKAIAAVVQSWNWHQVTVIHEDVGSWTNGVMPYLHDSLREIGAE VSQFVGLSSFASSDSLSRELKNLKREQCRVFVVHLSLPLAVRLFEMAKKLKMMEKDYVWITTHHITSLVHSIDASIISSMQGIVGVKSYFSETGTRFQDF SSRFRKRFRRENPEEENNEPGIYAVQAYDAIWTIARALKGSNRRNQELLEKVLQTDFQGLSGKVQFNNHKMAPTQMFQIINVVGKSYRELGFWSSGLGFS ETIGKHATYSPLMNDLEQVLWPGGPRYTPRGWTELTREKPLLVGVPAKSGYKEYVKVEYDRSGNASFDGLAIEIFNATVRRLPFYLPYEFVAFNDISYDN LVGQIGKKFDAVVGDVAIVASRYSHVEFSLPFSETGLMLVVPARSSNKAWSFIKPFTKSMWASITVITIYNGFVVWLIERHAHPELRGSMLHQIGIMLWL SFNTLFSLQGGKLHSNLSRMSVVVWLFVALVVIQTYTANLTSMLTVQRLEPTVTSVEELLKSNAAVGYCSGSYLENYLVEVLRFPRNNVKHYGSAEEYAQ AFNKKEIAAAFIGTPLAKIFLAKFCKKFIAAGPTFNIGGFGFAFPRGSPLLASINEALLKVSENGTLVQLENNFIGALQKCQDKEEENPSLSPNGFRALF IITVGTSTIALVIYIFCIASSFSGLTTIRGLMFIIIKHWCYQSKRFSRRVSNVESLGNSSPQHAPNLQLSQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374300 [exp]	0	1
AT4G23880			unknown protein		Potri.003G140266 [exp]	9.38	0.8588
AT4G23880			unknown protein		Potri.003G140233 [exp]	13.71	0.8585
AT4G23880			unknown protein		Potri.003G140200 [exp]	17.23	0.8582
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.007G066300 [exp]	21.81	0.8357
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.006G268700 [exp]	25.00	0.8415
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.005G256100 [exp]	29.08	0.8378	11
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.008G205200 [exp]	30.59	0.8347	Pt-IFS1.42
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268400 [exp]	36.37	0.8317
AT2G46600			Calcium-binding EF-hand family...		Potri.014G101700 [exp]	38.57	0.8221
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.006G268200 [exp]	43.74	0.8241

Compare expression of checked genes

Potri.001G374300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.