Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 446 / 1e-142 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 423 / 7e-134 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 420 / 7e-133 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 416 / 9e-132 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G29100 417 / 1e-131 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G11210 397 / 4e-125 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G24710 397 / 1e-124 ATGLR2.3 glutamate receptor 2.3 (.1) AT3G51480 392 / 2e-122 ATGLR3.6 glutamate receptor 3.6 (.1) AT4G35290 384 / 2e-119 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 381 / 9e-118 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G374600 [exp] 1605 / 0 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374800 [exp] 1592 / 0 AT2G29120 426 / 6e-135 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375100 [exp] 1556 / 0 AT2G29120 419 / 3e-132 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375000 [exp] 1551 / 0 AT2G29120 415 / 1e-130 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 956 / 0 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375200 [exp] 948 / 0 AT2G29120 436 / 8e-139 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375133 [exp] 764 / 0 AT5G11210 243 / 3e-72 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.014G028500 [exp] 524 / 2e-173 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052400 [exp] 525 / 6e-173 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038670 [exp] 640 / 0 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10026235 [exp] 461 / 1e-147 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 442 / 8e-141 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 417 / 2e-132 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10013952 [exp] 415 / 1e-131 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 412 / 8e-131 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 386 / 8e-120 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026553 [exp] 375 / 7e-116 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10039672 [exp] 370 / 2e-114 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 367 / 1e-112 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.001G374700.1 pacid=42788122 polypeptide=Potri.001G374700.1.p locus=Potri.001G374700 ID=Potri.001G374700.1.v4.1 annot-version=v4.1 ATGGGTACTTTGCCTCACGCCTTCTCGTTGTTCGCTCTAATTTTGCTCTTGACATCCGGTACAGGAGCCGATCAAAGCACCAAGACACAGGCTATTTTCA AAGGAAGTGCTAGAATAGGAGCTATTGTGGATACAAGTTCCCGTATTGGCAAAGAAGAAATAGTAGCGATGGAAGTTGCAAAGGAGGATTTCTATGGCTT CGGAAATCTAACATTTTTGTTAATAAATGACTCTCAAAAGGATACCATCCATGCAGCTCTTGAAGCTAAGGATCTTATCGACACACGACAAGTACAAGCC ATTATAGGACCACAGACATGGGAAGAGGTGTCATTAGTTGCTGAGATTGCCAGAGAAACACAGGTTCCAATTCTTTCTTTTGCTGACACAGCTCCAGAAT GGGCACCTGAACGATGGCCTTCTCTACTTCAAGCTTCACCTGATAAGCGTGCTCAAATGAAAGCTATAGCTGCTATTGTGCAATCATGGAACTGGCATCA GGTCATTGTGATATATGAAGATACAGATTCTTCAGCAAGGGGAGTCATACCACATCTACATGATGCCCTTAGAGAAGTTAATTCAGAAGTAAGCCAATTT GTAGCCTTCTCTCCTTTTGCTTCTTCCGATTCAATCTCCAAAGAGCTTGAAAATATCAAAAGCAAGCAGTACTGTAGAGTCTTTGTTGTTCATTTGTCCT TCAAATTGGCTGTGCGGTTATTTGAAATGGCAAAGAACATGGAAATGATGAAAAAGGACTATGTATGGATCACAACAGATCCCTTTACAAGCCTTGTCCA TTCCATCAATGCCTCTGTAATATCCTCAATGAAAGGAATTCTAGGAGTCCGGAGTTACTACCCTAAAATGGGACAGCATTTCGAGAACTTTAATCAAAGA TTTCGTACACGTTTTAGCAGAAAATATCCCCGAGAAGAAAAGAAAGAGCCTGGGATTTACGCCGTGCAAGCCTATTATGCTATGAGGACAATAGCTCTTG GATTAAATAAGACCGGAAGTAAAAGGGGAGGGAAAGAGTTGTTGGAAAACATTTTGGACGCAGACTTTCATGGTTTATCAGGTGAAGTTAAATTCAAAAA CCAGAATGTTGCTGCAGCAGAAATATTTGAGATCGTGAATATTGTAATAGGAACGGGTTACAAAGAACTCGGGTATTGGTCCAATGGATTGGGATTCTCG GAGGACATCCATGAAAATTCTATTTATAACTCGTCAATGATTGATTTGGGGCAAGTGTATTGGCCAGGGGGTCCTAGGTGTACCCCAAGAGGATGGACTG CACTGACAAGTGCTAAGCGATTGCGAATCGGAGTGCCTTCCATGTCAGGCTACAAAGAATATGTGAATGTGGATGATCGCTTGGGAACGAACTTCTCTGG TTTTTCAATCGAGGTCTTCAAAGCAACTACAGAATCAATGAAAATGGAATGTGATGATTGCATGCCATCCTTTCCGCTATACGAGTTCCAATACTTCAAT GGAAGTTACGATAAACTTGTAGAGCAAATTCATCTAAAGAACTTCGACGCAGTAGTTGGTGATGTGGAAATAGTTTCAAGCAGATACCAATATGCAGAAT TCACCAATCCATATACTGAAACAGGATTGGTGTTGATCGTCCCGGCTCGTTCGAGCAGTAAAGCATGGTCATTCGTTAAACCATTCACCACAACCATGTG GGTTTTAATCTCAGTGATTACAGTCTACAATGGTTTTGTTGTTTGGTGGATAGAACGAAAGCATTGTGATGAACTACAAGGCTCCATCCCAAATCAAATT GGGATCATGATTTGGTTATCCTTCAACACTCTTTTCTCCTTGAATGGGCCAAAGCTTCATAGCAATCTATCAAGGATGTCAGGGGTGGTGTGGCTGTTTG TGGCTCTAATCATCATCCAGACGTACACAGCCAACCTCACAAGCATGCTAACTGTTCAGAGGCTTGAACCCACTATACCAAGCGTTGAAGAACTATTAAA TAGCAATGCAATGGTTGGATATTGTACAGGTTCCTATATGGAAAGATATTTGGCGGAAGTTTTAAAATTCAAGAGCCAAAACTTGCTGCATTTTCGGTCA GCAGCAAGTTATGCTAAAGGCTTCGAGGACAGGAATATCTCTGCTGCCTTTCTTGGAACTCCCTATGCCAAGATATTCCTTGCAAAATACTGCAATAGAT TCATCCAAATTGGACCAACGTACAAAATTGGAGGGTTTGGATTTGCGTTTCCGCGCGGATCTCCATTACTTGCTAGCGTGAATGAGGCTCTACTGAAAAT ATCAGAAAATGGAACGCTACAAGAACTAGAGAAGACATGGATTACCCCACAAAAATGCCCGGAGATGCAGAGTGAAAGTTCCAGCCTTGGACCCAGTGGC TTTCGAGTACTTTTCTTTATAACTGGAGGCACAACAACAATTGTCTTCGTCATATACGTCTGTCGCACTAATTTGGTGAGGCATAAAAACATATGGGGAA TTATCTCAGCTGTACTGAAACGTTGGTTCTCTCCGAGGAGGCACTTCACTAGAAGAGTAGCCAACGTAGAAATTCCTCCAAAAGCTTTTCCAGAGGCTCC AGTCCCGCTGGCTTGA
AA sequence Show only first row Show all	>Potri.001G374700.1 pacid=42788122 polypeptide=Potri.001G374700.1.p locus=Potri.001G374700 ID=Potri.001G374700.1.v4.1 annot-version=v4.1 MGTLPHAFSLFALILLLTSGTGADQSTKTQAIFKGSARIGAIVDTSSRIGKEEIVAMEVAKEDFYGFGNLTFLLINDSQKDTIHAALEAKDLIDTRQVQA IIGPQTWEEVSLVAEIARETQVPILSFADTAPEWAPERWPSLLQASPDKRAQMKAIAAIVQSWNWHQVIVIYEDTDSSARGVIPHLHDALREVNSEVSQF VAFSPFASSDSISKELENIKSKQYCRVFVVHLSFKLAVRLFEMAKNMEMMKKDYVWITTDPFTSLVHSINASVISSMKGILGVRSYYPKMGQHFENFNQR FRTRFSRKYPREEKKEPGIYAVQAYYAMRTIALGLNKTGSKRGGKELLENILDADFHGLSGEVKFKNQNVAAAEIFEIVNIVIGTGYKELGYWSNGLGFS EDIHENSIYNSSMIDLGQVYWPGGPRCTPRGWTALTSAKRLRIGVPSMSGYKEYVNVDDRLGTNFSGFSIEVFKATTESMKMECDDCMPSFPLYEFQYFN GSYDKLVEQIHLKNFDAVVGDVEIVSSRYQYAEFTNPYTETGLVLIVPARSSSKAWSFVKPFTTTMWVLISVITVYNGFVVWWIERKHCDELQGSIPNQI GIMIWLSFNTLFSLNGPKLHSNLSRMSGVVWLFVALIIIQTYTANLTSMLTVQRLEPTIPSVEELLNSNAMVGYCTGSYMERYLAEVLKFKSQNLLHFRS AASYAKGFEDRNISAAFLGTPYAKIFLAKYCNRFIQIGPTYKIGGFGFAFPRGSPLLASVNEALLKISENGTLQELEKTWITPQKCPEMQSESSSLGPSG FRVLFFITGGTTTIVFVIYVCRTNLVRHKNIWGIISAVLKRWFSPRRHFTRRVANVEIPPKAFPEAPVPLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374700 [exp]	0	1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374600 [exp]	1.00	0.9999
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374800 [exp]	1.41	0.9999
					Potri.001G091400 [exp]	2.44	0.9994
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375000 [exp]	4.47	0.9992
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.001G375166 [exp]	5.47	0.9990
AT5G06740			Concanavalin A-like lectin pro...		Potri.004G209300 [exp]	6.00	0.9979
AT1G35210			unknown protein		Potri.005G161700 [exp]	7.34	0.9962
AT2G21100			Disease resistance-responsive ...		Potri.001G214600 [exp]	7.48	0.9976
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375100 [exp]	8.12	0.9989
					Potri.015G034166 [exp]	8.36	0.9988

Compare expression of checked genes

Potri.001G374700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.