Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53210 249 / 9e-74 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) AT1G29020 179 / 3e-48 Calcium-binding EF-hand family protein (.1) AT1G29025 167 / 6e-44 Calcium-binding EF-hand family protein (.1) AT2G34030 166 / 1e-43 Calcium-binding EF-hand family protein (.1) AT2G34020 161 / 5e-42 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375400 [exp] 1269 / 0 AT1G53210 249 / 2e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375500 [exp] 258 / 4e-77 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.004G052800 [exp] 196 / 2e-54 AT1G53210 313 / 2e-99 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042848 [exp] 269 / 4e-81 AT1G53210 800 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10028144 [exp] 245 / 3e-73 AT1G53210 538 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10033629 [exp] 241 / 2e-71 AT1G53210 463 / 4e-158 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10017657 [exp] 233 / 1e-67 AT1G53210 561 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.001G375300.3 pacid=42793457 polypeptide=Potri.001G375300.3.p locus=Potri.001G375300 ID=Potri.001G375300.3.v4.1 annot-version=v4.1 ATGGAAATGAGGCTTATCTCAAAAACTGTATGTTTTATACTTTTTCTTCTTTTAACAGTTCGTATAAACGTTAAAGGCCGCTCTCTGGCACACAGCTCTG TTGAATTACTGGTTTCAGATGGCATCAATGATGTCCAAGAAAACCAATCTTCCATTCTACTTCTCAAAGGGATGGATTCTTCCTCTGAAGAGAAGTGTGA GCAATTGTATGGCTTCTTGCCGTGCTCCAGTAATATTTTTGGGCATCTCTTTCTAATTGCAGTGTATGAATATATGTTGTTCCATGGAGAGGGCTACTTG GCCTCTGGAGGTGAGAAGATTTTCAGGATTCTTGGACCTGGTGTCTTCGGTGCCAGTGCATTCCAGGTTCTTGGAGCCCTTCCTGAGTCCTTGATACTTC TAGGAGTCGGACTCCTCGCAGGAACATCTATTTTGCTTCTAACAATGCTCTGGGGCACCTGTGTTATCGCTGGCAGCGTTCAATCGTCAAAGCCAACCAT TTCCAATACTTCAAGCTCAAGATTATTATCATGGTTTACTGAGTTTGGAGTCACTACGGATTTGGAGACAAGCTACACAGCAAGGATTATGGGTCTTTCT GTCTTACCATTTCTTATTTTGCAAATCCCAAAGATTTTCAACTCAAATTCTGGGGAATACTTGACGATATTGATCTCTCTTGTTGTTTCAGTGGCTTCTC TGTTGATATATTTCTTCTATCAGATCTTCGAACCGTGGATTCAAAAGAGAAGACTGGAATATGTAAAATATGATGAAGCTCTTTTAAGAATTCTGCAACT TGTGCAAGAACGAGCTTTAGGGAGTATTCTGACAGGAGAGGGGGCTCCAAATATAAATGCTATACAGAGACTATTTGAGGAAATAGATGAAGATGGTGAT GACTGTATATCGCCCTCTGAAGTGAGGAAACTTCTGCTCGACATAAAGTCTACAGGAATGAATATCGATAAAGACAATGCATCAGAAGAATTAATCAAAG TATTAGATCTGAATGATGATAAGAAAATAACTAAGGAAGAATTTGTACATACTTTTACAAAATGGCTTGAAGAGACAAAGTATGCTATGGAGAAGCGATA CTTCACAATTAACTCCTTGAAGAGGACTTATCAGGTTTTTCATCCGTTCGTAGAAAGTAAAAGAAAAGAACGTGAGATGAAGAGAAATCTCATGTCAGAA ATCGTGAGTCATCTACAGAGCGTTGCTTTAGGAAACCTAATCAAAGAAGATGGTACTCCGGATTCACCTACTATTAGAAGGTTGTTTGAAGAAATTGATC GTGATGCAGATAATTGCATATCAAAAGATGAGTTAAAAGAACTAATGAAAAAGATTGAGATTGGTAAGATCTCTTGGGATGTAGATGAAGCAGCTGAAAA AATCATGGAAGCACTTGACACGAGCGGAGATCAAATGATCGATGAGAAGGAGTTCGCCGAGGGAATTGTAAGCTGGTTGATTAACACGTCCGAAAATGTA ACTCCTGTATCAAGTCGGTCCCAAGATGATAACAATCGAAGAACCTGGGAAGAAGTGGATAAGTTATTGAAGGATGAAAAAACCAATGCTGTAGACAAAT CATCATGGGCTTGGTTTAAGGCTATAATGTCTATGGTGCTTGGAGTTGCTATATTATCAGTGCTAGCAGAGCCGCTGATACATAGTGTTCAGAATTTCTC CGAGGATGCAGGGATACCATCTTTTTTTGTCTCCTTTGTGTTAGTTCCACTCGCAACCAACGCAAGAGCAGCCACTTCAGCTATCACGACTGCCTGTCGT AAGAAGTCTATAACCACTTCCTTGACATTTTCCGAGATTTATGGTGGGGTGTTCATGAACAATGTTCTTGGCTGTTCTGTTCTTCTATTTCTAGTTTATG CTCGTGGATTGACATGGGAATTCTCAGCTGAAGTACTGGTTGTGCTAATTACCTGTGCTATAATGAGTCTCGTCGTAAGCTTTCACTCCGATTTCCCATT ATGGACATCATTCATGGCATTCCTCTTGTATCCATTTTCTTTGTTACTTGCTTATGTTTTCAACGATGTTCTCGATTATGTTTAG
AA sequence Show only first row Show all	>Potri.001G375300.3 pacid=42793457 polypeptide=Potri.001G375300.3.p locus=Potri.001G375300 ID=Potri.001G375300.3.v4.1 annot-version=v4.1 MEMRLISKTVCFILFLLLTVRINVKGRSLAHSSVELLVSDGINDVQENQSSILLLKGMDSSSEEKCEQLYGFLPCSSNIFGHLFLIAVYEYMLFHGEGYL ASGGEKIFRILGPGVFGASAFQVLGALPESLILLGVGLLAGTSILLLTMLWGTCVIAGSVQSSKPTISNTSSSRLLSWFTEFGVTTDLETSYTARIMGLS VLPFLILQIPKIFNSNSGEYLTILISLVVSVASLLIYFFYQIFEPWIQKRRLEYVKYDEALLRILQLVQERALGSILTGEGAPNINAIQRLFEEIDEDGD DCISPSEVRKLLLDIKSTGMNIDKDNASEELIKVLDLNDDKKITKEEFVHTFTKWLEETKYAMEKRYFTINSLKRTYQVFHPFVESKRKEREMKRNLMSE IVSHLQSVALGNLIKEDGTPDSPTIRRLFEEIDRDADNCISKDELKELMKKIEIGKISWDVDEAAEKIMEALDTSGDQMIDEKEFAEGIVSWLINTSENV TPVSSRSQDDNNRRTWEEVDKLLKDEKTNAVDKSSWAWFKAIMSMVLGVAILSVLAEPLIHSVQNFSEDAGIPSFFVSFVLVPLATNARAATSAITTACR KKSITTSLTFSEIYGGVFMNNVLGCSVLLFLVYARGLTWEFSAEVLVVLITCAIMSLVVSFHSDFPLWTSFMAFLLYPFSLLLAYVFNDVLDYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375300 [exp]	0	1
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375400 [exp]	5.29	0.9485
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023012 [exp]	8.71	0.9300
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.012G120492 [exp]	12.64	0.9330
AT5G38260			Protein kinase superfamily pro...		Potri.010G120950 [exp]	21.63	0.9198
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	23.49	0.9327
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	24.04	0.9151	CAT5.1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G000800 [exp]	25.92	0.9184
AT1G08280			Glycosyltransferase family 29 ...		Potri.009G144000 [exp]	31.08	0.9216
AT1G56500			haloacid dehalogenase-like hyd...		Potri.013G007800 [exp]	38.43	0.9255
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.007G057200 [exp]	38.47	0.9247

Compare expression of checked genes

Potri.001G375300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.